miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 105329 0.67 0.714332
Target:  5'- -cCUGGccgaggcccgcGCGCgcgcGCUGCAGacgGCGACCAu -3'
miRNA:   3'- aaGACC-----------UGCGa---CGACGUCg--CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 129089 0.67 0.714332
Target:  5'- cUCggGGGCGUaGUUGCuGCGCAcgagcGCCAg -3'
miRNA:   3'- aAGa-CCUGCGaCGACGuCGCGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 122395 0.67 0.70414
Target:  5'- ---cGGGCGCgcGCUgGCGGCGCucGCCGc -3'
miRNA:   3'- aagaCCUGCGa-CGA-CGUCGCGu-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 106648 0.67 0.70414
Target:  5'- -cCUGGACGCcGCggcGCAcguGCGCGagGCCGc -3'
miRNA:   3'- aaGACCUGCGaCGa--CGU---CGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 11059 0.67 0.703117
Target:  5'- -cCUGGACGCggGCcacacugUGCGGCG-GACCGu -3'
miRNA:   3'- aaGACCUGCGa-CG-------ACGUCGCgUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 105026 0.68 0.683576
Target:  5'- -gCUGGugacgcaggcgGCGCUGCUGCucGGCGCcgUCGa -3'
miRNA:   3'- aaGACC-----------UGCGACGACG--UCGCGuuGGU- -5'
29397 3' -57.6 NC_006151.1 + 105077 0.68 0.674261
Target:  5'- -gCUGGACGUgcaggccgucgagugGCUGCaccaGGCGCGGCUc -3'
miRNA:   3'- aaGACCUGCGa--------------CGACG----UCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 114105 0.68 0.672186
Target:  5'- -cCUGGGCcucggcgGCUGCUGCcccacguGCGCcGCCGc -3'
miRNA:   3'- aaGACCUG-------CGACGACGu------CGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 99571 0.68 0.672186
Target:  5'- ---cGcGGCGCUGCUGCgcgagguGGCgGCGGCCGa -3'
miRNA:   3'- aagaC-CUGCGACGACG-------UCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 20140 0.68 0.662836
Target:  5'- ---cGGGCGCcGCggggGCGGCGCGuggACCGc -3'
miRNA:   3'- aagaCCUGCGaCGa---CGUCGCGU---UGGU- -5'
29397 3' -57.6 NC_006151.1 + 4050 0.68 0.658673
Target:  5'- ---cGGGCGCgggccccguccacGCUGUAGCGCA-CCAg -3'
miRNA:   3'- aagaCCUGCGa------------CGACGUCGCGUuGGU- -5'
29397 3' -57.6 NC_006151.1 + 107451 0.68 0.652423
Target:  5'- -gCUGGAC-CUGCU-CGGCGaCGACCu -3'
miRNA:   3'- aaGACCUGcGACGAcGUCGC-GUUGGu -5'
29397 3' -57.6 NC_006151.1 + 2592 0.68 0.652423
Target:  5'- -gCUGGcgguagGCGCgcgGCgGCAGCGgGACCGg -3'
miRNA:   3'- aaGACC------UGCGa--CGaCGUCGCgUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 105377 0.68 0.641992
Target:  5'- -gCUGG-CGCUGC-GCAGCGacGCCGu -3'
miRNA:   3'- aaGACCuGCGACGaCGUCGCguUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85529 0.68 0.641992
Target:  5'- ---cGGGCcugcuGCUGCUGCGGCGCcuGCUg -3'
miRNA:   3'- aagaCCUG-----CGACGACGUCGCGu-UGGu -5'
29397 3' -57.6 NC_006151.1 + 100429 0.68 0.631554
Target:  5'- ---gGGGCGCUGC-GCGGCGUGAUg- -3'
miRNA:   3'- aagaCCUGCGACGaCGUCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 103242 0.69 0.62529
Target:  5'- ---aGGAC-CUGCUGCGGCacauccgcgccauggGCGGCCAc -3'
miRNA:   3'- aagaCCUGcGACGACGUCG---------------CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 100886 0.69 0.621116
Target:  5'- -cCUGGAggUGCUGCgccGCGGCGCGcgcgcGCCc -3'
miRNA:   3'- aaGACCU--GCGACGa--CGUCGCGU-----UGGu -5'
29397 3' -57.6 NC_006151.1 + 54866 0.69 0.621116
Target:  5'- cUCUGG-CaGCcGCUGUGGCGCGACgCGa -3'
miRNA:   3'- aAGACCuG-CGaCGACGUCGCGUUG-GU- -5'
29397 3' -57.6 NC_006151.1 + 121315 0.69 0.620072
Target:  5'- -gCUGGAgcguggaggcggcCGCcgaGCUGguGCGCGACCu -3'
miRNA:   3'- aaGACCU-------------GCGa--CGACguCGCGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.