miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 3' -57.1 NC_006151.1 + 141616 0.66 0.83404
Target:  5'- gGCUgccgggaucGGGCgggUCgCUGCcGcGGCGGCGCg -3'
miRNA:   3'- gCGA---------CCCGa--AG-GACGaCuUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 49846 0.66 0.83404
Target:  5'- gGCggcGGGC--CCgcGCUGGGcGCAGCACg -3'
miRNA:   3'- gCGa--CCCGaaGGa-CGACUU-CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 114437 0.66 0.83404
Target:  5'- uGCUGGaCcgCCUGCUcGggGCcuGCGCc -3'
miRNA:   3'- gCGACCcGaaGGACGA-CuuCGu-CGUG- -5'
29398 3' -57.1 NC_006151.1 + 57286 0.66 0.83404
Target:  5'- aGCaGGGCgUCCaGCgcgGccuuGGCGGCGCg -3'
miRNA:   3'- gCGaCCCGaAGGaCGa--Cu---UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 4314 0.66 0.83404
Target:  5'- uCGCgGGGCacgcggCCggGCUGcgcggcggcgaAGGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaa----GGa-CGAC-----------UUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 2327 0.66 0.825512
Target:  5'- aGCgGGGCggCCUcggcgucggGCUccAGCAGCGCc -3'
miRNA:   3'- gCGaCCCGaaGGA---------CGAcuUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 12759 0.66 0.825512
Target:  5'- gCGgaGGGCUg---GCUcGAGGCcAGCGCg -3'
miRNA:   3'- -GCgaCCCGAaggaCGA-CUUCG-UCGUG- -5'
29398 3' -57.1 NC_006151.1 + 46591 0.66 0.816803
Target:  5'- ---cGGGCggCCgUGCUGAGGCgcgAGCAg -3'
miRNA:   3'- gcgaCCCGaaGG-ACGACUUCG---UCGUg -5'
29398 3' -57.1 NC_006151.1 + 115737 0.66 0.796127
Target:  5'- aGUUGcacaccaccuugauGGCcgCCUGCUGcuguccAGCAGCACg -3'
miRNA:   3'- gCGAC--------------CCGaaGGACGACu-----UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 27001 0.67 0.780317
Target:  5'- uGCUcGGGCgaga-GCUGGAGCAGgGCc -3'
miRNA:   3'- gCGA-CCCGaaggaCGACUUCGUCgUG- -5'
29398 3' -57.1 NC_006151.1 + 81654 0.67 0.780317
Target:  5'- uCGaaGGGCUUCCcccGCacGGAGCGGCGg -3'
miRNA:   3'- -GCgaCCCGAAGGa--CGa-CUUCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 84693 0.67 0.770829
Target:  5'- aGCUGcGGCc----GCUGGAGCGGCAg -3'
miRNA:   3'- gCGAC-CCGaaggaCGACUUCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 85529 0.67 0.770829
Target:  5'- ---cGGGCcUgCUGCUGcuGCGGCGCc -3'
miRNA:   3'- gcgaCCCGaAgGACGACuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 93762 0.67 0.770829
Target:  5'- gCGCgGGGCgUCCcccagguaguUGUUGuagauGCAGCACg -3'
miRNA:   3'- -GCGaCCCGaAGG----------ACGACuu---CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 97606 0.67 0.770829
Target:  5'- aCGC-GGGCacgugcaCCUGC--GAGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaa-----GGACGacUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 116792 0.67 0.770829
Target:  5'- cCGCUGGGUggCgaGCgaguaGAGCAGaCACg -3'
miRNA:   3'- -GCGACCCGaaGgaCGac---UUCGUC-GUG- -5'
29398 3' -57.1 NC_006151.1 + 137014 0.67 0.770829
Target:  5'- gCGCUGGGCgcCCUGCUcGGccuGcCGGaCGCg -3'
miRNA:   3'- -GCGACCCGaaGGACGA-CUu--C-GUC-GUG- -5'
29398 3' -57.1 NC_006151.1 + 112587 0.67 0.770829
Target:  5'- cCGC-GGGCUUCgUGgaGGccgccGCGGCGCc -3'
miRNA:   3'- -GCGaCCCGAAGgACgaCUu----CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 30753 0.67 0.761213
Target:  5'- cCGC-GGGCggg--GCgGggGCAGCACu -3'
miRNA:   3'- -GCGaCCCGaaggaCGaCuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 92048 0.67 0.761213
Target:  5'- cCGCUGccuGCUgcgCCUGCUGcgcauGCuGCACa -3'
miRNA:   3'- -GCGACc--CGAa--GGACGACuu---CGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.