miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 128793 0.66 0.867819
Target:  5'- uCGGuCGCCU-CGGCGAgCgcgGCGcGCGUGg -3'
miRNA:   3'- uGUC-GCGGAuGUCGCU-Ga--CGC-UGCAC- -5'
29399 3' -56.9 NC_006151.1 + 127238 0.66 0.867819
Target:  5'- cACAcGCGCCaGCucuuGCGGC-GCGACGc- -3'
miRNA:   3'- -UGU-CGCGGaUGu---CGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 64945 0.66 0.867819
Target:  5'- uCAGCGCCUgGCcGCG-CUGCGgGCGc- -3'
miRNA:   3'- uGUCGCGGA-UGuCGCuGACGC-UGCac -5'
29399 3' -56.9 NC_006151.1 + 137671 0.66 0.867819
Target:  5'- -gAGCGCCcGCcguGCGGCUGCcGCGc- -3'
miRNA:   3'- ugUCGCGGaUGu--CGCUGACGcUGCac -5'
29399 3' -56.9 NC_006151.1 + 96574 0.66 0.860246
Target:  5'- aACAGCGCCgccucGCGGCG-CgagGCGcCGg- -3'
miRNA:   3'- -UGUCGCGGa----UGUCGCuGa--CGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 76256 0.66 0.860246
Target:  5'- -gAGgGCCUcgACGGCGAUcgagaagGCGGCGUu -3'
miRNA:   3'- ugUCgCGGA--UGUCGCUGa------CGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 71756 0.66 0.853254
Target:  5'- -aAGCGCCgcgcgugguccugcgGCAGCGGCgGCGGgGg- -3'
miRNA:   3'- ugUCGCGGa--------------UGUCGCUGaCGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 123895 0.66 0.852467
Target:  5'- cGCGGCcccGCCgUGCGGCG-CgGCGGcCGUGa -3'
miRNA:   3'- -UGUCG---CGG-AUGUCGCuGaCGCU-GCAC- -5'
29399 3' -56.9 NC_006151.1 + 121403 0.66 0.852467
Target:  5'- -uGGgGCCUGCGGCGcggGCgGgGACGUc -3'
miRNA:   3'- ugUCgCGGAUGUCGC---UGaCgCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 82630 0.66 0.851677
Target:  5'- cGCGGUGggcgcgggaccccCCUGCGGCGAgggcggcccaccCUGCGGCGc- -3'
miRNA:   3'- -UGUCGC-------------GGAUGUCGCU------------GACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 76889 0.66 0.850886
Target:  5'- cCAGCGCCgccugcugcgcCGGCGAgaGCGGCa-- -3'
miRNA:   3'- uGUCGCGGau---------GUCGCUgaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 21978 0.66 0.850093
Target:  5'- uGCGGCGCCgGCAGCGcccaaagauCUGCcuggggucgcagucGGCGUa -3'
miRNA:   3'- -UGUCGCGGaUGUCGCu--------GACG--------------CUGCAc -5'
29399 3' -56.9 NC_006151.1 + 139724 0.66 0.844486
Target:  5'- aGCAGCaGCac-CAGCGGCgGCGACa-- -3'
miRNA:   3'- -UGUCG-CGgauGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 84427 0.66 0.844486
Target:  5'- gGCGGCGC--GCGGCGGCgcGCGGCc-- -3'
miRNA:   3'- -UGUCGCGgaUGUCGCUGa-CGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 36952 0.66 0.844486
Target:  5'- aGCAGCuCCagcaGCAGCGGCaGCGACu-- -3'
miRNA:   3'- -UGUCGcGGa---UGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 11691 0.66 0.844486
Target:  5'- gACGGgGCCgcgggACGGCGcgUGCGGCGc- -3'
miRNA:   3'- -UGUCgCGGa----UGUCGCugACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 55878 0.66 0.836311
Target:  5'- cGCGGCGCUgucGCGGCGgACgUGCGcCGg- -3'
miRNA:   3'- -UGUCGCGGa--UGUCGC-UG-ACGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 54854 0.66 0.836311
Target:  5'- -gAGUGCCUggugcucugGCAGCcGCUGUGGCGc- -3'
miRNA:   3'- ugUCGCGGA---------UGUCGcUGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 20304 0.66 0.836311
Target:  5'- -gGGCGCCcGCcGUGGCguugGCGGCGg- -3'
miRNA:   3'- ugUCGCGGaUGuCGCUGa---CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 106386 0.66 0.827949
Target:  5'- cGCGGCGCCcGCugcGCGACggGCaGGCGcUGu -3'
miRNA:   3'- -UGUCGCGGaUGu--CGCUGa-CG-CUGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.