miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 63516 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63087 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGuucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63312 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgauCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63393 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63132 0.78 0.311613
Target:  5'- ---gGUCACCACGGUGcCGuucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63753 0.77 0.318801
Target:  5'- ---gGUCACCGCGGUGuCGuuggcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63798 0.77 0.318801
Target:  5'- ---gGUCACCGCGGUGuCGuuggcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63312 0.77 0.333549
Target:  5'- -----cCACCAcacCGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 66030 0.76 0.364522
Target:  5'- cGGUAUCugCACGGCGAC-CgCCGCGu -3'
miRNA:   3'- cUUAUAGugGUGCCGCUGcG-GGCGCc -5'
2940 3' -56.1 NC_001493.1 + 1152 0.75 0.405949
Target:  5'- ---aGUCACCGCGGUGccCGCuuCCGCGGa -3'
miRNA:   3'- cuuaUAGUGGUGCCGCu-GCG--GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 116707 0.75 0.405949
Target:  5'- ---aGUCACCGCGGUGccCGCuuCCGCGGa -3'
miRNA:   3'- cuuaUAGUGGUGCCGCu-GCG--GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 57334 0.75 0.432184
Target:  5'- cGggUG-CACCGCGGUGAaGCCCGaGGa -3'
miRNA:   3'- -CuuAUaGUGGUGCCGCUgCGGGCgCC- -5'
2940 3' -56.1 NC_001493.1 + 63267 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63222 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63177 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63006 0.75 0.450213
Target:  5'- ---aGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63575 0.74 0.47801
Target:  5'- -----aCACCGCGaaugucaCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGUGCc------GCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63698 0.74 0.47801
Target:  5'- -----aCACCGCGaaugucaCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGUGCc------GCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 24378 0.73 0.526105
Target:  5'- ---gGUCGCCAaccacuCGGUGACGCgCUGUGGg -3'
miRNA:   3'- cuuaUAGUGGU------GCCGCUGCG-GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62978 0.73 0.526105
Target:  5'- ---cGUCGCgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuaUAGUGgUGCCGCUgCGGGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.