miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 64064 1.11 0.001978
Target:  5'- cGAAUAUCACCACGGCGACGCCCGCGGg -3'
miRNA:   3'- -CUUAUAGUGGUGCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 64022 1.11 0.001978
Target:  5'- cGAAUAUCACCACGGCGACGCCCGCGGg -3'
miRNA:   3'- -CUUAUAGUGGUGCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63980 1.11 0.001978
Target:  5'- cGAAUAUCACCACGGCGACGCCCGCGGg -3'
miRNA:   3'- -CUUAUAGUGGUGCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63611 1.11 0.001978
Target:  5'- cGAAUAUCACCACGGCGACGCCCGCGGg -3'
miRNA:   3'- -CUUAUAGUGGUGCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63734 1 0.010982
Target:  5'- cGAAUAUCACCACGGCGACGCCCaCGGg -3'
miRNA:   3'- -CUUAUAGUGGUGCCGCUGCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 63887 0.87 0.080165
Target:  5'- -----cCACCAcacCGGCGACGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63932 0.87 0.080165
Target:  5'- -----cCACCAcauCGGCGACGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63222 0.86 0.093971
Target:  5'- -----cCACCGCaccGGCGACGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGUG---CCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63773 0.84 0.128583
Target:  5'- -----cCACCAcacCGGCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63830 0.84 0.128583
Target:  5'- -----cCACCAcacCGGCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63527 0.84 0.128583
Target:  5'- -----cCACCAcacCGGCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63267 0.84 0.128583
Target:  5'- -----cCACCAcacCGGCGAUGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 64102 0.83 0.150021
Target:  5'- ------gACCAcacCGGCGACGCCCGCGGg -3'
miRNA:   3'- cuuauagUGGU---GCCGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63696 0.81 0.197884
Target:  5'- ---gGUCACCACGGUGuCGUUCGCGGu -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63639 0.8 0.234885
Target:  5'- ---gGUCACCGCGGUGcCGUUCGCGGu -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62766 0.79 0.264744
Target:  5'- -----cCACgACGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62808 0.79 0.264744
Target:  5'- -----cCACgACGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62724 0.79 0.264744
Target:  5'- -----cCACgACGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62640 0.79 0.264744
Target:  5'- -----cCACgACGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 62682 0.79 0.264744
Target:  5'- -----cCACgACGGCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.