miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 1152 0.75 0.405949
Target:  5'- ---aGUCACCGCGGUGccCGCuuCCGCGGa -3'
miRNA:   3'- cuuaUAGUGGUGCCGCu-GCG--GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 9784 0.66 0.896024
Target:  5'- ---cAUCACCA-GGaCGACGaCCC-CGGa -3'
miRNA:   3'- cuuaUAGUGGUgCC-GCUGC-GGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 9796 0.66 0.896024
Target:  5'- ------aACCGCGGgGACGUCgagcucggCGCGGg -3'
miRNA:   3'- cuuauagUGGUGCCgCUGCGG--------GCGCC- -5'
2940 3' -56.1 NC_001493.1 + 10888 0.68 0.82013
Target:  5'- -uGUcgCACC-CGGgGAgGCCCGUGu -3'
miRNA:   3'- cuUAuaGUGGuGCCgCUgCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 13114 0.7 0.687663
Target:  5'- uGGcgAUCuCgGCGGCGgccaGCGCCCGCGc -3'
miRNA:   3'- -CUuaUAGuGgUGCCGC----UGCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 15175 0.7 0.697716
Target:  5'- -----cCGCCgACGGCGACcuuuccaCCCGCGGc -3'
miRNA:   3'- cuuauaGUGG-UGCCGCUGc------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 15517 0.7 0.707713
Target:  5'- ----cUCACCACGGUgcuaucgaagGugGCCC-CGGa -3'
miRNA:   3'- cuuauAGUGGUGCCG----------CugCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 16242 0.66 0.911019
Target:  5'- aGGUGUgGCUACcGCGAUGCCUguucgcgcugaauaaGCGGa -3'
miRNA:   3'- cUUAUAgUGGUGcCGCUGCGGG---------------CGCC- -5'
2940 3' -56.1 NC_001493.1 + 16545 0.68 0.78464
Target:  5'- aGggUGcC-CCAgGGCGAgagGCCCGUGGa -3'
miRNA:   3'- -CuuAUaGuGGUgCCGCUg--CGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 23711 0.66 0.896024
Target:  5'- uGAAauUCACUgacuaucucaACGGCGcgcuCGCCUGUGGu -3'
miRNA:   3'- -CUUauAGUGG----------UGCCGCu---GCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 24378 0.73 0.526105
Target:  5'- ---gGUCGCCAaccacuCGGUGACGCgCUGUGGg -3'
miRNA:   3'- cuuaUAGUGGU------GCCGCUGCG-GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 24954 0.72 0.575908
Target:  5'- aAAUAcCACCAUgGGCGACugucuGCUCGCGGg -3'
miRNA:   3'- cUUAUaGUGGUG-CCGCUG-----CGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 25290 0.67 0.85291
Target:  5'- cGAggAUCGCaCGCGGuUGAUGCCCccCGGa -3'
miRNA:   3'- -CUuaUAGUG-GUGCC-GCUGCGGGc-GCC- -5'
2940 3' -56.1 NC_001493.1 + 26603 0.66 0.902434
Target:  5'- -cGUGUCAUCACGGUca-GCCUGUGc -3'
miRNA:   3'- cuUAUAGUGGUGCCGcugCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 27279 0.7 0.677566
Target:  5'- --cUGUCACuCAcCGGCG-UGCCCGgGGu -3'
miRNA:   3'- cuuAUAGUG-GU-GCCGCuGCGGGCgCC- -5'
2940 3' -56.1 NC_001493.1 + 28267 0.72 0.615477
Target:  5'- aGAAUAUCACgGCGGauuacaaCGGucUGCUCGCGGa -3'
miRNA:   3'- -CUUAUAGUGgUGCC-------GCU--GCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 28314 0.69 0.746977
Target:  5'- ---gAUCACCgagGCGGCGAacaCGUgUGCGGa -3'
miRNA:   3'- cuuaUAGUGG---UGCCGCU---GCGgGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 28443 0.72 0.616496
Target:  5'- cGGAgagCGCCACguugcgagcgaGGCGGCGCuCCGCGa -3'
miRNA:   3'- -CUUauaGUGGUG-----------CCGCUGCG-GGCGCc -5'
2940 3' -56.1 NC_001493.1 + 29549 0.66 0.896024
Target:  5'- aGggUGgu-CCGCGacagucCGAgCGCCCGCGGu -3'
miRNA:   3'- -CuuAUaguGGUGCc-----GCU-GCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 30934 0.67 0.875437
Target:  5'- cGGUGcgGCCGCGGUGACGgC-GCGGu -3'
miRNA:   3'- cUUAUagUGGUGCCGCUGCgGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.