miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 27279 0.7 0.677566
Target:  5'- --cUGUCACuCAcCGGCG-UGCCCGgGGu -3'
miRNA:   3'- cuuAUAGUG-GU-GCCGCuGCGGGCgCC- -5'
2940 3' -56.1 NC_001493.1 + 63222 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63267 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63006 0.75 0.450213
Target:  5'- ---aGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 85225 0.73 0.555825
Target:  5'- uGGAUGaCuuCCACGaacGCGugGCCCGUGGg -3'
miRNA:   3'- -CUUAUaGu-GGUGC---CGCugCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 53391 0.72 0.575908
Target:  5'- gGAGUccAUCACCGCGGUGGCGauCCCGaccaucgcaCGGa -3'
miRNA:   3'- -CUUA--UAGUGGUGCCGCUGC--GGGC---------GCC- -5'
2940 3' -56.1 NC_001493.1 + 24954 0.72 0.575908
Target:  5'- aAAUAcCACCAUgGGCGACugucuGCUCGCGGg -3'
miRNA:   3'- cUUAUaGUGGUG-CCGCUG-----CGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 44413 0.71 0.636889
Target:  5'- -----cCGCC-CGcGCGAUGUCCGCGGc -3'
miRNA:   3'- cuuauaGUGGuGC-CGCUGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 99498 0.71 0.647084
Target:  5'- uAAUGUaGCCugGGCu-CGCUCGCGGu -3'
miRNA:   3'- cUUAUAgUGGugCCGcuGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63177 0.75 0.441146
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGUGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 116707 0.75 0.405949
Target:  5'- ---aGUCACCGCGGUGccCGCuuCCGCGGa -3'
miRNA:   3'- cuuaUAGUGGUGCCGCu-GCG--GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 1152 0.75 0.405949
Target:  5'- ---aGUCACCGCGGUGccCGCuuCCGCGGa -3'
miRNA:   3'- cuuaUAGUGGUGCCGCu-GCG--GGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63639 0.8 0.234885
Target:  5'- ---gGUCACCGCGGUGcCGUUCGCGGu -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63087 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGuucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63312 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgauCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63393 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63516 0.78 0.29079
Target:  5'- ---gGUCACCACGGUGuCGgucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63132 0.78 0.311613
Target:  5'- ---gGUCACCACGGUGcCGuucgcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63753 0.77 0.318801
Target:  5'- ---gGUCACCGCGGUGuCGuuggcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 63798 0.77 0.318801
Target:  5'- ---gGUCACCGCGGUGuCGuuggcuCCCGCGGg -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGC------GGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.