Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29400 | 5' | -55.3 | NC_006151.1 | + | 20339 | 0.66 | 0.920649 |
Target: 5'- -aCGCGCgacacGAcGCUGGCGUUCAgcACCAu -3' miRNA: 3'- gaGUGCGa----CUuCGACUGCGGGU--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 36913 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCcGGAGa-GGCGCCCuccGCCGc -3' miRNA: 3'- gaGUGCGaCUUCgaCUGCGGGu--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 85769 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCUGgcGCUGgACGCgCAcUCGa -3' miRNA: 3'- gaGUGCGACuuCGAC-UGCGgGUuGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 92217 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCUGGAGCacGAUGCUgCAcgcGCCGc -3' miRNA: 3'- gaGUGCGACUUCGa-CUGCGG-GU---UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 98462 | 0.66 | 0.920649 |
Target: 5'- cCUgGCGCUGuGGCgccuGCGCCaCGACUg -3' miRNA: 3'- -GAgUGCGACuUCGac--UGCGG-GUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 112455 | 0.66 | 0.908786 |
Target: 5'- -cCAUggGCUGGAGCgagGACGCCUucgaggcGCCGu -3' miRNA: 3'- gaGUG--CGACUUCGa--CUGCGGGu------UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 100482 | 0.66 | 0.908786 |
Target: 5'- --gGCGCUGGgccuGCaGGCGCCCGuguuCCGg -3' miRNA: 3'- gagUGCGACUu---CGaCUGCGGGUu---GGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 99043 | 0.66 | 0.893943 |
Target: 5'- cCUCGCGCacgggGAcgcguacgugcgcgAGCUG-CGCCCGggcACCGu -3' miRNA: 3'- -GAGUGCGa----CU--------------UCGACuGCGGGU---UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 118951 | 0.66 | 0.895951 |
Target: 5'- --gGCGCUGucGCUGgagGCGCUCGucGCCGc -3' miRNA: 3'- gagUGCGACuuCGAC---UGCGGGU--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 140175 | 0.66 | 0.895951 |
Target: 5'- gCUCACGCUGcgcacGCUgGAC-CCCAucgugGCCAc -3' miRNA: 3'- -GAGUGCGACuu---CGA-CUGcGGGU-----UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 83091 | 0.66 | 0.895951 |
Target: 5'- -cCACGCgUGcaccucGAGCgGGCGCCCGcGCCGg -3' miRNA: 3'- gaGUGCG-AC------UUCGaCUGCGGGU-UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 122308 | 0.66 | 0.895951 |
Target: 5'- cCUCACGCgGcAGCUGGCGgugcgcguggacCCCGaggacgugGCCAa -3' miRNA: 3'- -GAGUGCGaCuUCGACUGC------------GGGU--------UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 125448 | 0.66 | 0.895951 |
Target: 5'- gUCGCGcCUGAaccccAGCgccGugGCCaCGGCCGc -3' miRNA: 3'- gAGUGC-GACU-----UCGa--CugCGG-GUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 80934 | 0.66 | 0.898595 |
Target: 5'- gUCGgGUUGAAGCUGgggaugguggaguugGCGCC-GGCCAu -3' miRNA: 3'- gAGUgCGACUUCGAC---------------UGCGGgUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 86898 | 0.66 | 0.902489 |
Target: 5'- -aCAaccaGCUGGuggucaaccAGCgcccGGCGCCCAGCCu -3' miRNA: 3'- gaGUg---CGACU---------UCGa---CUGCGGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 71814 | 0.66 | 0.902489 |
Target: 5'- gCUCGCGCgUGgcGCU---GCCCAGCUg -3' miRNA: 3'- -GAGUGCG-ACuuCGAcugCGGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 121312 | 0.66 | 0.902489 |
Target: 5'- --gGCGCUGGAGCguggaGGCGgCC-GCCGa -3' miRNA: 3'- gagUGCGACUUCGa----CUGCgGGuUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 134635 | 0.66 | 0.902489 |
Target: 5'- ----aGCUGguGCUGACGCgCgAGCCGc -3' miRNA: 3'- gagugCGACuuCGACUGCG-GgUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 55537 | 0.66 | 0.902489 |
Target: 5'- aUCACGCgcgccauGGGCgacGACGCCUAcgugGCCAa -3' miRNA: 3'- gAGUGCGac-----UUCGa--CUGCGGGU----UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 39920 | 0.66 | 0.908786 |
Target: 5'- --gGCuGCUGGAGCccGACGCCgaGGCCGc -3' miRNA: 3'- gagUG-CGACUUCGa-CUGCGGg-UUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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