miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 99043 0.66 0.893943
Target:  5'- cCUCGCGCacgggGAcgcguacgugcgcgAGCUG-CGCCCGggcACCGu -3'
miRNA:   3'- -GAGUGCGa----CU--------------UCGACuGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 100041 0.67 0.851888
Target:  5'- gCUCGCGCacGAGCUGcacggggucguGCGCgCGGCCGc -3'
miRNA:   3'- -GAGUGCGacUUCGAC-----------UGCGgGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 100482 0.66 0.908786
Target:  5'- --gGCGCUGGgccuGCaGGCGCCCGuguuCCGg -3'
miRNA:   3'- gagUGCGACUu---CGaCUGCGGGUu---GGU- -5'
29400 5' -55.3 NC_006151.1 + 101437 0.66 0.908786
Target:  5'- uUCACGCUGGucguGGUcGGCGCCgugGGCCu -3'
miRNA:   3'- gAGUGCGACU----UCGaCUGCGGg--UUGGu -5'
29400 5' -55.3 NC_006151.1 + 102030 0.71 0.630889
Target:  5'- uUCGCcguccgggaGCUGGAGCUGGCcccGCUCGACCu -3'
miRNA:   3'- gAGUG---------CGACUUCGACUG---CGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 102274 0.67 0.867464
Target:  5'- -gCGCGCUGccgGAGCgcg-GCCCGGCCGg -3'
miRNA:   3'- gaGUGCGAC---UUCGacugCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 102637 0.69 0.791297
Target:  5'- -gCGCGCUcGAGGC-GGCGCUCGagGCCGc -3'
miRNA:   3'- gaGUGCGA-CUUCGaCUGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 102945 0.72 0.610098
Target:  5'- -gCGCGCUGGAcGC-GGCGCCC-GCCGc -3'
miRNA:   3'- gaGUGCGACUU-CGaCUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 103306 0.67 0.867464
Target:  5'- gCUCGCGC-GgcGC-GACGCCgAGCUg -3'
miRNA:   3'- -GAGUGCGaCuuCGaCUGCGGgUUGGu -5'
29400 5' -55.3 NC_006151.1 + 103505 0.72 0.589375
Target:  5'- -gCGCGCUaccgcGAGcuGCUGACGUCCGACCc -3'
miRNA:   3'- gaGUGCGA-----CUU--CGACUGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 103899 0.75 0.441448
Target:  5'- cCUgGCGCUGGAGgUGGCGCgCgCGGCCGc -3'
miRNA:   3'- -GAgUGCGACUUCgACUGCG-G-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 104158 0.68 0.818328
Target:  5'- --gACGCcgcGGAGCUG-CGCCCcGCCGc -3'
miRNA:   3'- gagUGCGa--CUUCGACuGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 105223 0.69 0.77252
Target:  5'- -aCACGCUGcggcagcGGCUGACGgCC-GCCGa -3'
miRNA:   3'- gaGUGCGACu------UCGACUGCgGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 106190 0.66 0.917193
Target:  5'- -cCGcCGCUGGAGCcGGCGgugcggcucgcccucCCCGACCu -3'
miRNA:   3'- gaGU-GCGACUUCGaCUGC---------------GGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 106359 0.67 0.843788
Target:  5'- -aCACGCUGGAcGCgGGCGCgCGcccGCCGc -3'
miRNA:   3'- gaGUGCGACUU-CGaCUGCGgGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 107279 0.66 0.91484
Target:  5'- -cCuCGgaGGAGCUGuACGgCCGGCCGa -3'
miRNA:   3'- gaGuGCgaCUUCGAC-UGCgGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 109734 0.74 0.479075
Target:  5'- gCUCGcCGCUGGAGCgGAUGCCgUGGCCGc -3'
miRNA:   3'- -GAGU-GCGACUUCGaCUGCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 112455 0.66 0.908786
Target:  5'- -cCAUggGCUGGAGCgagGACGCCUucgaggcGCCGu -3'
miRNA:   3'- gaGUG--CGACUUCGa--CUGCGGGu------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 112613 0.67 0.859782
Target:  5'- -gCGcCGCUGgcGCUGGacgaGCCCuGCCGc -3'
miRNA:   3'- gaGU-GCGACuuCGACUg---CGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 113343 0.69 0.781978
Target:  5'- gCUgGCGCUGAAGCacgUGcGCGgCCgCAACCGc -3'
miRNA:   3'- -GAgUGCGACUUCG---AC-UGC-GG-GUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.