miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 68873 0.71 0.682732
Target:  5'- --aGCGCcGggGC--GCGCCCGGCCAc -3'
miRNA:   3'- gagUGCGaCuuCGacUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 69143 0.67 0.859782
Target:  5'- -gCGCGCgGguGCUcGACGCCguGCCGc -3'
miRNA:   3'- gaGUGCGaCuuCGA-CUGCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 70043 0.66 0.889175
Target:  5'- -aCACGgaGAcccacGGCUcgcaGACGCCCgAGCCGu -3'
miRNA:   3'- gaGUGCgaCU-----UCGA----CUGCGGG-UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 71686 0.68 0.800467
Target:  5'- -cCGCGUgccGAGCgUGuCGCCCAGCCGc -3'
miRNA:   3'- gaGUGCGac-UUCG-ACuGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 71814 0.66 0.902489
Target:  5'- gCUCGCGCgUGgcGCU---GCCCAGCUg -3'
miRNA:   3'- -GAGUGCG-ACuuCGAcugCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 77460 0.67 0.843788
Target:  5'- gCUCACGCUGc-GCgggaacGCGCCCGggaACCGc -3'
miRNA:   3'- -GAGUGCGACuuCGac----UGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 77510 0.67 0.843788
Target:  5'- --uGCGCacGGAGCUGGCGCgCCucgGCCGc -3'
miRNA:   3'- gagUGCGa-CUUCGACUGCG-GGu--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 77688 0.67 0.851888
Target:  5'- --gGCGCUcucGCUGACGCUCGugCAc -3'
miRNA:   3'- gagUGCGAcuuCGACUGCGGGUugGU- -5'
29400 5' -55.3 NC_006151.1 + 77806 0.72 0.624648
Target:  5'- uUCGCGCUGguGCaGGCguaccucuccgagcuGCCCAGCCGc -3'
miRNA:   3'- gAGUGCGACuuCGaCUG---------------CGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 77956 0.7 0.733491
Target:  5'- -cCACGCUG-AGCguGCGCCCGcGCCGg -3'
miRNA:   3'- gaGUGCGACuUCGacUGCGGGU-UGGU- -5'
29400 5' -55.3 NC_006151.1 + 80934 0.66 0.898595
Target:  5'- gUCGgGUUGAAGCUGgggaugguggaguugGCGCC-GGCCAu -3'
miRNA:   3'- gAGUgCGACUUCGAC---------------UGCGGgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 81227 0.69 0.753226
Target:  5'- -gCGCGUgaacacGAAGCUGGCGCCC--CCGc -3'
miRNA:   3'- gaGUGCGa-----CUUCGACUGCGGGuuGGU- -5'
29400 5' -55.3 NC_006151.1 + 83091 0.66 0.895951
Target:  5'- -cCACGCgUGcaccucGAGCgGGCGCCCGcGCCGg -3'
miRNA:   3'- gaGUGCG-AC------UUCGaCUGCGGGU-UGGU- -5'
29400 5' -55.3 NC_006151.1 + 85769 0.66 0.920649
Target:  5'- -cCGCGCUGgcGCUGgACGCgCAcUCGa -3'
miRNA:   3'- gaGUGCGACuuCGAC-UGCGgGUuGGU- -5'
29400 5' -55.3 NC_006151.1 + 85839 0.66 0.91484
Target:  5'- gUgGCGCUGGAGCUGcagaaccgccaGCGCgugaCGGCCc -3'
miRNA:   3'- gAgUGCGACUUCGAC-----------UGCGg---GUUGGu -5'
29400 5' -55.3 NC_006151.1 + 86898 0.66 0.902489
Target:  5'- -aCAaccaGCUGGuggucaaccAGCgcccGGCGCCCAGCCu -3'
miRNA:   3'- gaGUg---CGACU---------UCGa---CUGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 90235 0.73 0.56878
Target:  5'- aUCGCGUcGcGGCUGgccaGCGCCCAGCCc -3'
miRNA:   3'- gAGUGCGaCuUCGAC----UGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 90830 0.68 0.83549
Target:  5'- gUCACGCUGAAcaggGGCGCCU-GCCGc -3'
miRNA:   3'- gAGUGCGACUUcga-CUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 92217 0.66 0.920649
Target:  5'- -cCGCGCUGGAGCacGAUGCUgCAcgcGCCGc -3'
miRNA:   3'- gaGUGCGACUUCGa-CUGCGG-GU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 98462 0.66 0.920649
Target:  5'- cCUgGCGCUGuGGCgccuGCGCCaCGACUg -3'
miRNA:   3'- -GAgUGCGACuUCGac--UGCGG-GUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.