Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29400 | 5' | -55.3 | NC_006151.1 | + | 68873 | 0.71 | 0.682732 |
Target: 5'- --aGCGCcGggGC--GCGCCCGGCCAc -3' miRNA: 3'- gagUGCGaCuuCGacUGCGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 69143 | 0.67 | 0.859782 |
Target: 5'- -gCGCGCgGguGCUcGACGCCguGCCGc -3' miRNA: 3'- gaGUGCGaCuuCGA-CUGCGGguUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 70043 | 0.66 | 0.889175 |
Target: 5'- -aCACGgaGAcccacGGCUcgcaGACGCCCgAGCCGu -3' miRNA: 3'- gaGUGCgaCU-----UCGA----CUGCGGG-UUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 71686 | 0.68 | 0.800467 |
Target: 5'- -cCGCGUgccGAGCgUGuCGCCCAGCCGc -3' miRNA: 3'- gaGUGCGac-UUCG-ACuGCGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 71814 | 0.66 | 0.902489 |
Target: 5'- gCUCGCGCgUGgcGCU---GCCCAGCUg -3' miRNA: 3'- -GAGUGCG-ACuuCGAcugCGGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 77460 | 0.67 | 0.843788 |
Target: 5'- gCUCACGCUGc-GCgggaacGCGCCCGggaACCGc -3' miRNA: 3'- -GAGUGCGACuuCGac----UGCGGGU---UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 77510 | 0.67 | 0.843788 |
Target: 5'- --uGCGCacGGAGCUGGCGCgCCucgGCCGc -3' miRNA: 3'- gagUGCGa-CUUCGACUGCG-GGu--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 77688 | 0.67 | 0.851888 |
Target: 5'- --gGCGCUcucGCUGACGCUCGugCAc -3' miRNA: 3'- gagUGCGAcuuCGACUGCGGGUugGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 77806 | 0.72 | 0.624648 |
Target: 5'- uUCGCGCUGguGCaGGCguaccucuccgagcuGCCCAGCCGc -3' miRNA: 3'- gAGUGCGACuuCGaCUG---------------CGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 77956 | 0.7 | 0.733491 |
Target: 5'- -cCACGCUG-AGCguGCGCCCGcGCCGg -3' miRNA: 3'- gaGUGCGACuUCGacUGCGGGU-UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 80934 | 0.66 | 0.898595 |
Target: 5'- gUCGgGUUGAAGCUGgggaugguggaguugGCGCC-GGCCAu -3' miRNA: 3'- gAGUgCGACUUCGAC---------------UGCGGgUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 81227 | 0.69 | 0.753226 |
Target: 5'- -gCGCGUgaacacGAAGCUGGCGCCC--CCGc -3' miRNA: 3'- gaGUGCGa-----CUUCGACUGCGGGuuGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 83091 | 0.66 | 0.895951 |
Target: 5'- -cCACGCgUGcaccucGAGCgGGCGCCCGcGCCGg -3' miRNA: 3'- gaGUGCG-AC------UUCGaCUGCGGGU-UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 85769 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCUGgcGCUGgACGCgCAcUCGa -3' miRNA: 3'- gaGUGCGACuuCGAC-UGCGgGUuGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 85839 | 0.66 | 0.91484 |
Target: 5'- gUgGCGCUGGAGCUGcagaaccgccaGCGCgugaCGGCCc -3' miRNA: 3'- gAgUGCGACUUCGAC-----------UGCGg---GUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 86898 | 0.66 | 0.902489 |
Target: 5'- -aCAaccaGCUGGuggucaaccAGCgcccGGCGCCCAGCCu -3' miRNA: 3'- gaGUg---CGACU---------UCGa---CUGCGGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 90235 | 0.73 | 0.56878 |
Target: 5'- aUCGCGUcGcGGCUGgccaGCGCCCAGCCc -3' miRNA: 3'- gAGUGCGaCuUCGAC----UGCGGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 90830 | 0.68 | 0.83549 |
Target: 5'- gUCACGCUGAAcaggGGCGCCU-GCCGc -3' miRNA: 3'- gAGUGCGACUUcga-CUGCGGGuUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 92217 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCUGGAGCacGAUGCUgCAcgcGCCGc -3' miRNA: 3'- gaGUGCGACUUCGa-CUGCGG-GU---UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 98462 | 0.66 | 0.920649 |
Target: 5'- cCUgGCGCUGuGGCgccuGCGCCaCGACUg -3' miRNA: 3'- -GAgUGCGACuUCGac--UGCGG-GUUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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