miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 85769 0.66 0.920649
Target:  5'- -cCGCGCUGgcGCUGgACGCgCAcUCGa -3'
miRNA:   3'- gaGUGCGACuuCGAC-UGCGgGUuGGU- -5'
29400 5' -55.3 NC_006151.1 + 36913 0.66 0.920649
Target:  5'- -cCGCGCcGGAGa-GGCGCCCuccGCCGc -3'
miRNA:   3'- gaGUGCGaCUUCgaCUGCGGGu--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 20339 0.66 0.920649
Target:  5'- -aCGCGCgacacGAcGCUGGCGUUCAgcACCAu -3'
miRNA:   3'- gaGUGCGa----CUuCGACUGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 106190 0.66 0.917193
Target:  5'- -cCGcCGCUGGAGCcGGCGgugcggcucgcccucCCCGACCu -3'
miRNA:   3'- gaGU-GCGACUUCGaCUGC---------------GGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 107279 0.66 0.91484
Target:  5'- -cCuCGgaGGAGCUGuACGgCCGGCCGa -3'
miRNA:   3'- gaGuGCgaCUUCGAC-UGCgGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 101437 0.66 0.908786
Target:  5'- uUCACGCUGGucguGGUcGGCGCCgugGGCCu -3'
miRNA:   3'- gAGUGCGACU----UCGaCUGCGGg--UUGGu -5'
29400 5' -55.3 NC_006151.1 + 39790 0.66 0.913649
Target:  5'- -cCGCGCggccaaccgcugGggGCUcGGCGCCCcGCUg -3'
miRNA:   3'- gaGUGCGa-----------CuuCGA-CUGCGGGuUGGu -5'
29400 5' -55.3 NC_006151.1 + 85839 0.66 0.91484
Target:  5'- gUgGCGCUGGAGCUGcagaaccgccaGCGCgugaCGGCCc -3'
miRNA:   3'- gAgUGCGACUUCGAC-----------UGCGg---GUUGGu -5'
29400 5' -55.3 NC_006151.1 + 139203 0.66 0.91484
Target:  5'- --gGCGCUGGAGCUccuggcggcGACGCU--GCCGc -3'
miRNA:   3'- gagUGCGACUUCGA---------CUGCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 142114 0.66 0.91484
Target:  5'- -gCugGgUGAAGCccaccgcgaggaUGGCGCCCGauGCCu -3'
miRNA:   3'- gaGugCgACUUCG------------ACUGCGGGU--UGGu -5'
29400 5' -55.3 NC_006151.1 + 57278 0.66 0.91484
Target:  5'- cCUCGCGC---AGCagGGCGUCCAGCgCGg -3'
miRNA:   3'- -GAGUGCGacuUCGa-CUGCGGGUUG-GU- -5'
29400 5' -55.3 NC_006151.1 + 112613 0.67 0.859782
Target:  5'- -gCGcCGCUGgcGCUGGacgaGCCCuGCCGc -3'
miRNA:   3'- gaGU-GCGACuuCGACUg---CGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 69143 0.67 0.859782
Target:  5'- -gCGCGCgGguGCUcGACGCCguGCCGc -3'
miRNA:   3'- gaGUGCGaCuuCGA-CUGCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 102274 0.67 0.867464
Target:  5'- -gCGCGCUGccgGAGCgcg-GCCCGGCCGg -3'
miRNA:   3'- gaGUGCGAC---UUCGacugCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 103306 0.67 0.867464
Target:  5'- gCUCGCGC-GgcGC-GACGCCgAGCUg -3'
miRNA:   3'- -GAGUGCGaCuuCGaCUGCGGgUUGGu -5'
29400 5' -55.3 NC_006151.1 + 21020 0.67 0.874927
Target:  5'- -gCACGCUGAcGCcGGCGCCCc---- -3'
miRNA:   3'- gaGUGCGACUuCGaCUGCGGGuuggu -5'
29400 5' -55.3 NC_006151.1 + 122234 0.67 0.874927
Target:  5'- uUCGaggaGCUGu-GCgUGACGgCCAACCAg -3'
miRNA:   3'- gAGUg---CGACuuCG-ACUGCgGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 53672 0.67 0.882166
Target:  5'- -gCACGCgu-AGCUGuaGCGCCCGAgCu -3'
miRNA:   3'- gaGUGCGacuUCGAC--UGCGGGUUgGu -5'
29400 5' -55.3 NC_006151.1 + 115175 0.67 0.882166
Target:  5'- -cCGCGCgGcAGggGGCGCuCCAGCCAg -3'
miRNA:   3'- gaGUGCGaCuUCgaCUGCG-GGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 19021 0.67 0.859782
Target:  5'- -gCGCGCcggcgaggUGAAGCUGcACGCCgGGuCCAc -3'
miRNA:   3'- gaGUGCG--------ACUUCGAC-UGCGGgUU-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.