Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29400 | 5' | -55.3 | NC_006151.1 | + | 36913 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCcGGAGa-GGCGCCCuccGCCGc -3' miRNA: 3'- gaGUGCGaCUUCgaCUGCGGGu--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 20339 | 0.66 | 0.920649 |
Target: 5'- -aCGCGCgacacGAcGCUGGCGUUCAgcACCAu -3' miRNA: 3'- gaGUGCGa----CUuCGACUGCGGGU--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 106190 | 0.66 | 0.917193 |
Target: 5'- -cCGcCGCUGGAGCcGGCGgugcggcucgcccucCCCGACCu -3' miRNA: 3'- gaGU-GCGACUUCGaCUGC---------------GGGUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 107279 | 0.66 | 0.91484 |
Target: 5'- -cCuCGgaGGAGCUGuACGgCCGGCCGa -3' miRNA: 3'- gaGuGCgaCUUCGAC-UGCgGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 142114 | 0.66 | 0.91484 |
Target: 5'- -gCugGgUGAAGCccaccgcgaggaUGGCGCCCGauGCCu -3' miRNA: 3'- gaGugCgACUUCG------------ACUGCGGGU--UGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 139203 | 0.66 | 0.91484 |
Target: 5'- --gGCGCUGGAGCUccuggcggcGACGCU--GCCGc -3' miRNA: 3'- gagUGCGACUUCGA---------CUGCGGguUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 85839 | 0.66 | 0.91484 |
Target: 5'- gUgGCGCUGGAGCUGcagaaccgccaGCGCgugaCGGCCc -3' miRNA: 3'- gAgUGCGACUUCGAC-----------UGCGg---GUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 39790 | 0.66 | 0.913649 |
Target: 5'- -cCGCGCggccaaccgcugGggGCUcGGCGCCCcGCUg -3' miRNA: 3'- gaGUGCGa-----------CuuCGA-CUGCGGGuUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 101437 | 0.66 | 0.908786 |
Target: 5'- uUCACGCUGGucguGGUcGGCGCCgugGGCCu -3' miRNA: 3'- gAGUGCGACU----UCGaCUGCGGg--UUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 100482 | 0.66 | 0.908786 |
Target: 5'- --gGCGCUGGgccuGCaGGCGCCCGuguuCCGg -3' miRNA: 3'- gagUGCGACUu---CGaCUGCGGGUu---GGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 57278 | 0.66 | 0.91484 |
Target: 5'- cCUCGCGC---AGCagGGCGUCCAGCgCGg -3' miRNA: 3'- -GAGUGCGacuUCGa-CUGCGGGUUG-GU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 115175 | 0.67 | 0.882166 |
Target: 5'- -cCGCGCgGcAGggGGCGCuCCAGCCAg -3' miRNA: 3'- gaGUGCGaCuUCgaCUGCG-GGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 112613 | 0.67 | 0.859782 |
Target: 5'- -gCGcCGCUGgcGCUGGacgaGCCCuGCCGc -3' miRNA: 3'- gaGU-GCGACuuCGACUg---CGGGuUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 69143 | 0.67 | 0.859782 |
Target: 5'- -gCGCGCgGguGCUcGACGCCguGCCGc -3' miRNA: 3'- gaGUGCGaCuuCGA-CUGCGGguUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 102274 | 0.67 | 0.867464 |
Target: 5'- -gCGCGCUGccgGAGCgcg-GCCCGGCCGg -3' miRNA: 3'- gaGUGCGAC---UUCGacugCGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 103306 | 0.67 | 0.867464 |
Target: 5'- gCUCGCGC-GgcGC-GACGCCgAGCUg -3' miRNA: 3'- -GAGUGCGaCuuCGaCUGCGGgUUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 21020 | 0.67 | 0.874927 |
Target: 5'- -gCACGCUGAcGCcGGCGCCCc---- -3' miRNA: 3'- gaGUGCGACUuCGaCUGCGGGuuggu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 122234 | 0.67 | 0.874927 |
Target: 5'- uUCGaggaGCUGu-GCgUGACGgCCAACCAg -3' miRNA: 3'- gAGUg---CGACuuCG-ACUGCgGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 53672 | 0.67 | 0.882166 |
Target: 5'- -gCACGCgu-AGCUGuaGCGCCCGAgCu -3' miRNA: 3'- gaGUGCGacuUCGAC--UGCGGGUUgGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 122569 | 0.67 | 0.884997 |
Target: 5'- -gUACGCcgUGAgcgagcugcaguuuuGGCUGGCGUCCAcgaACCAg -3' miRNA: 3'- gaGUGCG--ACU---------------UCGACUGCGGGU---UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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