miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 81227 0.69 0.753226
Target:  5'- -gCGCGUgaacacGAAGCUGGCGCCC--CCGc -3'
miRNA:   3'- gaGUGCGa-----CUUCGACUGCGGGuuGGU- -5'
29400 5' -55.3 NC_006151.1 + 115588 0.69 0.762933
Target:  5'- gUCGCGCUcGAgcAGCUcgcgcGugGCCCAGCg- -3'
miRNA:   3'- gAGUGCGA-CU--UCGA-----CugCGGGUUGgu -5'
29400 5' -55.3 NC_006151.1 + 105223 0.69 0.77252
Target:  5'- -aCACGCUGcggcagcGGCUGACGgCC-GCCGa -3'
miRNA:   3'- gaGUGCGACu------UCGACUGCgGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 113343 0.69 0.781978
Target:  5'- gCUgGCGCUGAAGCacgUGcGCGgCCgCAACCGc -3'
miRNA:   3'- -GAgUGCGACUUCG---AC-UGC-GG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 102637 0.69 0.791297
Target:  5'- -gCGCGCUcGAGGC-GGCGCUCGagGCCGc -3'
miRNA:   3'- gaGUGCGA-CUUCGaCUGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 71686 0.68 0.800467
Target:  5'- -cCGCGUgccGAGCgUGuCGCCCAGCCGc -3'
miRNA:   3'- gaGUGCGac-UUCG-ACuGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 47403 0.68 0.800467
Target:  5'- aCUUugGC-----CUGGCGCCCGGCCAc -3'
miRNA:   3'- -GAGugCGacuucGACUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 19645 0.68 0.807691
Target:  5'- -gCGCGCgucgagggUGAAGUUGGCGCCCucggacacguucACCAg -3'
miRNA:   3'- gaGUGCG--------ACUUCGACUGCGGGu-----------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 40242 0.68 0.809481
Target:  5'- gCUC-CGCUG-AGCggGGCGCCCccucggcccGGCCGg -3'
miRNA:   3'- -GAGuGCGACuUCGa-CUGCGGG---------UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 136965 0.68 0.818328
Target:  5'- -cCGCcuGCUGGAGCUGGcCGCCgcGCCGg -3'
miRNA:   3'- gaGUG--CGACUUCGACU-GCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 104158 0.68 0.818328
Target:  5'- --gACGCcgcGGAGCUG-CGCCCcGCCGc -3'
miRNA:   3'- gagUGCGa--CUUCGACuGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 90830 0.68 0.83549
Target:  5'- gUCACGCUGAAcaggGGCGCCU-GCCGc -3'
miRNA:   3'- gAGUGCGACUUcga-CUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 77460 0.67 0.843788
Target:  5'- gCUCACGCUGc-GCgggaacGCGCCCGggaACCGc -3'
miRNA:   3'- -GAGUGCGACuuCGac----UGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 77510 0.67 0.843788
Target:  5'- --uGCGCacGGAGCUGGCGCgCCucgGCCGc -3'
miRNA:   3'- gagUGCGa-CUUCGACUGCG-GGu--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 106359 0.67 0.843788
Target:  5'- -aCACGCUGGAcGCgGGCGCgCGcccGCCGc -3'
miRNA:   3'- gaGUGCGACUU-CGaCUGCGgGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 100041 0.67 0.851888
Target:  5'- gCUCGCGCacGAGCUGcacggggucguGCGCgCGGCCGc -3'
miRNA:   3'- -GAGUGCGacUUCGAC-----------UGCGgGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 77688 0.67 0.851888
Target:  5'- --gGCGCUcucGCUGACGCUCGugCAc -3'
miRNA:   3'- gagUGCGAcuuCGACUGCGGGUugGU- -5'
29400 5' -55.3 NC_006151.1 + 131124 0.67 0.851888
Target:  5'- --gGCGCggGAGGCcgcGGCGCCgCGGCCGu -3'
miRNA:   3'- gagUGCGa-CUUCGa--CUGCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 132805 0.67 0.85822
Target:  5'- --gGCGCUGGuacagcgcguccgGGCUGGcCGCCCGcgggacgGCCAc -3'
miRNA:   3'- gagUGCGACU-------------UCGACU-GCGGGU-------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 112613 0.67 0.859782
Target:  5'- -gCGcCGCUGgcGCUGGacgaGCCCuGCCGc -3'
miRNA:   3'- gaGU-GCGACuuCGACUg---CGGGuUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.