miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 134635 0.66 0.902489
Target:  5'- ----aGCUGguGCUGACGCgCgAGCCGc -3'
miRNA:   3'- gagugCGACuuCGACUGCG-GgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 55537 0.66 0.902489
Target:  5'- aUCACGCgcgccauGGGCgacGACGCCUAcgugGCCAa -3'
miRNA:   3'- gAGUGCGac-----UUCGa--CUGCGGGU----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 80934 0.66 0.898595
Target:  5'- gUCGgGUUGAAGCUGgggaugguggaguugGCGCC-GGCCAu -3'
miRNA:   3'- gAGUgCGACUUCGAC---------------UGCGGgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 118951 0.66 0.895951
Target:  5'- --gGCGCUGucGCUGgagGCGCUCGucGCCGc -3'
miRNA:   3'- gagUGCGACuuCGAC---UGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 140175 0.66 0.895951
Target:  5'- gCUCACGCUGcgcacGCUgGAC-CCCAucgugGCCAc -3'
miRNA:   3'- -GAGUGCGACuu---CGA-CUGcGGGU-----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 83091 0.66 0.895951
Target:  5'- -cCACGCgUGcaccucGAGCgGGCGCCCGcGCCGg -3'
miRNA:   3'- gaGUGCG-AC------UUCGaCUGCGGGU-UGGU- -5'
29400 5' -55.3 NC_006151.1 + 122308 0.66 0.895951
Target:  5'- cCUCACGCgGcAGCUGGCGgugcgcguggacCCCGaggacgugGCCAa -3'
miRNA:   3'- -GAGUGCGaCuUCGACUGC------------GGGU--------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 125448 0.66 0.895951
Target:  5'- gUCGCGcCUGAaccccAGCgccGugGCCaCGGCCGc -3'
miRNA:   3'- gAGUGC-GACU-----UCGa--CugCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 99043 0.66 0.893943
Target:  5'- cCUCGCGCacgggGAcgcguacgugcgcgAGCUG-CGCCCGggcACCGu -3'
miRNA:   3'- -GAGUGCGa----CU--------------UCGACuGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 70043 0.66 0.889175
Target:  5'- -aCACGgaGAcccacGGCUcgcaGACGCCCgAGCCGu -3'
miRNA:   3'- gaGUGCgaCU-----UCGA----CUGCGGG-UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 17919 0.66 0.889175
Target:  5'- --gGCGCUGAucGC-GACGCCCA-UCAg -3'
miRNA:   3'- gagUGCGACUu-CGaCUGCGGGUuGGU- -5'
29400 5' -55.3 NC_006151.1 + 122569 0.67 0.884997
Target:  5'- -gUACGCcgUGAgcgagcugcaguuuuGGCUGGCGUCCAcgaACCAg -3'
miRNA:   3'- gaGUGCG--ACU---------------UCGACUGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 115175 0.67 0.882166
Target:  5'- -cCGCGCgGcAGggGGCGCuCCAGCCAg -3'
miRNA:   3'- gaGUGCGaCuUCgaCUGCG-GGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 53672 0.67 0.882166
Target:  5'- -gCACGCgu-AGCUGuaGCGCCCGAgCu -3'
miRNA:   3'- gaGUGCGacuUCGAC--UGCGGGUUgGu -5'
29400 5' -55.3 NC_006151.1 + 21020 0.67 0.874927
Target:  5'- -gCACGCUGAcGCcGGCGCCCc---- -3'
miRNA:   3'- gaGUGCGACUuCGaCUGCGGGuuggu -5'
29400 5' -55.3 NC_006151.1 + 122234 0.67 0.874927
Target:  5'- uUCGaggaGCUGu-GCgUGACGgCCAACCAg -3'
miRNA:   3'- gAGUg---CGACuuCG-ACUGCgGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 103306 0.67 0.867464
Target:  5'- gCUCGCGC-GgcGC-GACGCCgAGCUg -3'
miRNA:   3'- -GAGUGCGaCuuCGaCUGCGGgUUGGu -5'
29400 5' -55.3 NC_006151.1 + 102274 0.67 0.867464
Target:  5'- -gCGCGCUGccgGAGCgcg-GCCCGGCCGg -3'
miRNA:   3'- gaGUGCGAC---UUCGacugCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 112613 0.67 0.859782
Target:  5'- -gCGcCGCUGgcGCUGGacgaGCCCuGCCGc -3'
miRNA:   3'- gaGU-GCGACuuCGACUg---CGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 19021 0.67 0.859782
Target:  5'- -gCGCGCcggcgaggUGAAGCUGcACGCCgGGuCCAc -3'
miRNA:   3'- gaGUGCG--------ACUUCGAC-UGCGGgUU-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.