miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 118256 1.08 0.003199
Target:  5'- gCUCACGCUGAAGCUGACGCCCAACCAc -3'
miRNA:   3'- -GAGUGCGACUUCGACUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 61312 0.82 0.175343
Target:  5'- gUCGCGCUGcagguccAGGgaGACGCCCGGCCAg -3'
miRNA:   3'- gAGUGCGAC-------UUCgaCUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 103899 0.75 0.441448
Target:  5'- cCUgGCGCUGGAGgUGGCGCgCgCGGCCGc -3'
miRNA:   3'- -GAgUGCGACUUCgACUGCG-G-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 109734 0.74 0.479075
Target:  5'- gCUCGcCGCUGGAGCgGAUGCCgUGGCCGc -3'
miRNA:   3'- -GAGU-GCGACUUCGaCUGCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 137067 0.73 0.548369
Target:  5'- -cCGCG-UGGAGCUGGCGCaCCGgcGCCAg -3'
miRNA:   3'- gaGUGCgACUUCGACUGCG-GGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 90235 0.73 0.56878
Target:  5'- aUCGCGUcGcGGCUGgccaGCGCCCAGCCc -3'
miRNA:   3'- gAGUGCGaCuUCGAC----UGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 103505 0.72 0.589375
Target:  5'- -gCGCGCUaccgcGAGcuGCUGACGUCCGACCc -3'
miRNA:   3'- gaGUGCGA-----CUU--CGACUGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 102945 0.72 0.610098
Target:  5'- -gCGCGCUGGAcGC-GGCGCCC-GCCGc -3'
miRNA:   3'- gaGUGCGACUU-CGaCUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 7654 0.72 0.610098
Target:  5'- cCUCGCGCUcGgcGCgcgcuccgagGGCGcCCCAGCCGg -3'
miRNA:   3'- -GAGUGCGA-CuuCGa---------CUGC-GGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 61398 0.72 0.620489
Target:  5'- -aCACGCUcGAGGCgaACGCCCcGCCGu -3'
miRNA:   3'- gaGUGCGA-CUUCGacUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 77806 0.72 0.624648
Target:  5'- uUCGCGCUGguGCaGGCguaccucuccgagcuGCCCAGCCGc -3'
miRNA:   3'- gAGUGCGACuuCGaCUG---------------CGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 102030 0.71 0.630889
Target:  5'- uUCGCcguccgggaGCUGGAGCUGGCcccGCUCGACCu -3'
miRNA:   3'- gAGUG---------CGACUUCGACUG---CGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 140474 0.71 0.679641
Target:  5'- -aCGCGCUGGacucccacaaaaccGGCUGcgacGCGCCCAccuGCCGc -3'
miRNA:   3'- gaGUGCGACU--------------UCGAC----UGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 3006 0.71 0.680672
Target:  5'- --gGCGUUGAGGCggccgaugucggGGCGCCCGGuCCAg -3'
miRNA:   3'- gagUGCGACUUCGa-----------CUGCGGGUU-GGU- -5'
29400 5' -55.3 NC_006151.1 + 60364 0.71 0.682732
Target:  5'- -gCGCGUcGAAGCUGA-GCCCGACg- -3'
miRNA:   3'- gaGUGCGaCUUCGACUgCGGGUUGgu -5'
29400 5' -55.3 NC_006151.1 + 68873 0.71 0.682732
Target:  5'- --aGCGCcGggGC--GCGCCCGGCCAc -3'
miRNA:   3'- gagUGCGaCuuCGacUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 55651 0.7 0.703231
Target:  5'- aUC-CGCUGcuucAAGCUGACGCgCGugGCCAa -3'
miRNA:   3'- gAGuGCGAC----UUCGACUGCGgGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 77956 0.7 0.733491
Target:  5'- -cCACGCUG-AGCguGCGCCCGcGCCGg -3'
miRNA:   3'- gaGUGCGACuUCGacUGCGGGU-UGGU- -5'
29400 5' -55.3 NC_006151.1 + 113800 0.69 0.743409
Target:  5'- -aCGCGCUGcuGC-GGCGCCaCGGCCu -3'
miRNA:   3'- gaGUGCGACuuCGaCUGCGG-GUUGGu -5'
29400 5' -55.3 NC_006151.1 + 113409 0.69 0.743409
Target:  5'- gCUCACGCgcgcgcacuGGCUGGCGCUgcGCCGc -3'
miRNA:   3'- -GAGUGCGacu------UCGACUGCGGguUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.