miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 3006 0.71 0.680672
Target:  5'- --gGCGUUGAGGCggccgaugucggGGCGCCCGGuCCAg -3'
miRNA:   3'- gagUGCGACUUCGa-----------CUGCGGGUU-GGU- -5'
29400 5' -55.3 NC_006151.1 + 7654 0.72 0.610098
Target:  5'- cCUCGCGCUcGgcGCgcgcuccgagGGCGcCCCAGCCGg -3'
miRNA:   3'- -GAGUGCGA-CuuCGa---------CUGC-GGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 17919 0.66 0.889175
Target:  5'- --gGCGCUGAucGC-GACGCCCA-UCAg -3'
miRNA:   3'- gagUGCGACUu-CGaCUGCGGGUuGGU- -5'
29400 5' -55.3 NC_006151.1 + 19021 0.67 0.859782
Target:  5'- -gCGCGCcggcgaggUGAAGCUGcACGCCgGGuCCAc -3'
miRNA:   3'- gaGUGCG--------ACUUCGAC-UGCGGgUU-GGU- -5'
29400 5' -55.3 NC_006151.1 + 19645 0.68 0.807691
Target:  5'- -gCGCGCgucgagggUGAAGUUGGCGCCCucggacacguucACCAg -3'
miRNA:   3'- gaGUGCG--------ACUUCGACUGCGGGu-----------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 20339 0.66 0.920649
Target:  5'- -aCGCGCgacacGAcGCUGGCGUUCAgcACCAu -3'
miRNA:   3'- gaGUGCGa----CUuCGACUGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 21020 0.67 0.874927
Target:  5'- -gCACGCUGAcGCcGGCGCCCc---- -3'
miRNA:   3'- gaGUGCGACUuCGaCUGCGGGuuggu -5'
29400 5' -55.3 NC_006151.1 + 36913 0.66 0.920649
Target:  5'- -cCGCGCcGGAGa-GGCGCCCuccGCCGc -3'
miRNA:   3'- gaGUGCGaCUUCgaCUGCGGGu--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 39790 0.66 0.913649
Target:  5'- -cCGCGCggccaaccgcugGggGCUcGGCGCCCcGCUg -3'
miRNA:   3'- gaGUGCGa-----------CuuCGA-CUGCGGGuUGGu -5'
29400 5' -55.3 NC_006151.1 + 39920 0.66 0.908786
Target:  5'- --gGCuGCUGGAGCccGACGCCgaGGCCGc -3'
miRNA:   3'- gagUG-CGACUUCGa-CUGCGGg-UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 40242 0.68 0.809481
Target:  5'- gCUC-CGCUG-AGCggGGCGCCCccucggcccGGCCGg -3'
miRNA:   3'- -GAGuGCGACuUCGa-CUGCGGG---------UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 47403 0.68 0.800467
Target:  5'- aCUUugGC-----CUGGCGCCCGGCCAc -3'
miRNA:   3'- -GAGugCGacuucGACUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 49581 0.66 0.920649
Target:  5'- -cCGCGCUc--GCcGGCGcCCCGGCCAg -3'
miRNA:   3'- gaGUGCGAcuuCGaCUGC-GGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 53672 0.67 0.882166
Target:  5'- -gCACGCgu-AGCUGuaGCGCCCGAgCu -3'
miRNA:   3'- gaGUGCGacuUCGAC--UGCGGGUUgGu -5'
29400 5' -55.3 NC_006151.1 + 55537 0.66 0.902489
Target:  5'- aUCACGCgcgccauGGGCgacGACGCCUAcgugGCCAa -3'
miRNA:   3'- gAGUGCGac-----UUCGa--CUGCGGGU----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 55651 0.7 0.703231
Target:  5'- aUC-CGCUGcuucAAGCUGACGCgCGugGCCAa -3'
miRNA:   3'- gAGuGCGAC----UUCGACUGCGgGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 57278 0.66 0.91484
Target:  5'- cCUCGCGC---AGCagGGCGUCCAGCgCGg -3'
miRNA:   3'- -GAGUGCGacuUCGa-CUGCGGGUUG-GU- -5'
29400 5' -55.3 NC_006151.1 + 60364 0.71 0.682732
Target:  5'- -gCGCGUcGAAGCUGA-GCCCGACg- -3'
miRNA:   3'- gaGUGCGaCUUCGACUgCGGGUUGgu -5'
29400 5' -55.3 NC_006151.1 + 61312 0.82 0.175343
Target:  5'- gUCGCGCUGcagguccAGGgaGACGCCCGGCCAg -3'
miRNA:   3'- gAGUGCGAC-------UUCgaCUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 61398 0.72 0.620489
Target:  5'- -aCACGCUcGAGGCgaACGCCCcGCCGu -3'
miRNA:   3'- gaGUGCGA-CUUCGacUGCGGGuUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.