Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29400 | 5' | -55.3 | NC_006151.1 | + | 3006 | 0.71 | 0.680672 |
Target: 5'- --gGCGUUGAGGCggccgaugucggGGCGCCCGGuCCAg -3' miRNA: 3'- gagUGCGACUUCGa-----------CUGCGGGUU-GGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 7654 | 0.72 | 0.610098 |
Target: 5'- cCUCGCGCUcGgcGCgcgcuccgagGGCGcCCCAGCCGg -3' miRNA: 3'- -GAGUGCGA-CuuCGa---------CUGC-GGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 17919 | 0.66 | 0.889175 |
Target: 5'- --gGCGCUGAucGC-GACGCCCA-UCAg -3' miRNA: 3'- gagUGCGACUu-CGaCUGCGGGUuGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 19021 | 0.67 | 0.859782 |
Target: 5'- -gCGCGCcggcgaggUGAAGCUGcACGCCgGGuCCAc -3' miRNA: 3'- gaGUGCG--------ACUUCGAC-UGCGGgUU-GGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 19645 | 0.68 | 0.807691 |
Target: 5'- -gCGCGCgucgagggUGAAGUUGGCGCCCucggacacguucACCAg -3' miRNA: 3'- gaGUGCG--------ACUUCGACUGCGGGu-----------UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 20339 | 0.66 | 0.920649 |
Target: 5'- -aCGCGCgacacGAcGCUGGCGUUCAgcACCAu -3' miRNA: 3'- gaGUGCGa----CUuCGACUGCGGGU--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 21020 | 0.67 | 0.874927 |
Target: 5'- -gCACGCUGAcGCcGGCGCCCc---- -3' miRNA: 3'- gaGUGCGACUuCGaCUGCGGGuuggu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 36913 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCcGGAGa-GGCGCCCuccGCCGc -3' miRNA: 3'- gaGUGCGaCUUCgaCUGCGGGu--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 39790 | 0.66 | 0.913649 |
Target: 5'- -cCGCGCggccaaccgcugGggGCUcGGCGCCCcGCUg -3' miRNA: 3'- gaGUGCGa-----------CuuCGA-CUGCGGGuUGGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 39920 | 0.66 | 0.908786 |
Target: 5'- --gGCuGCUGGAGCccGACGCCgaGGCCGc -3' miRNA: 3'- gagUG-CGACUUCGa-CUGCGGg-UUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 40242 | 0.68 | 0.809481 |
Target: 5'- gCUC-CGCUG-AGCggGGCGCCCccucggcccGGCCGg -3' miRNA: 3'- -GAGuGCGACuUCGa-CUGCGGG---------UUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 47403 | 0.68 | 0.800467 |
Target: 5'- aCUUugGC-----CUGGCGCCCGGCCAc -3' miRNA: 3'- -GAGugCGacuucGACUGCGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 49581 | 0.66 | 0.920649 |
Target: 5'- -cCGCGCUc--GCcGGCGcCCCGGCCAg -3' miRNA: 3'- gaGUGCGAcuuCGaCUGC-GGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 53672 | 0.67 | 0.882166 |
Target: 5'- -gCACGCgu-AGCUGuaGCGCCCGAgCu -3' miRNA: 3'- gaGUGCGacuUCGAC--UGCGGGUUgGu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 55537 | 0.66 | 0.902489 |
Target: 5'- aUCACGCgcgccauGGGCgacGACGCCUAcgugGCCAa -3' miRNA: 3'- gAGUGCGac-----UUCGa--CUGCGGGU----UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 55651 | 0.7 | 0.703231 |
Target: 5'- aUC-CGCUGcuucAAGCUGACGCgCGugGCCAa -3' miRNA: 3'- gAGuGCGAC----UUCGACUGCGgGU--UGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 57278 | 0.66 | 0.91484 |
Target: 5'- cCUCGCGC---AGCagGGCGUCCAGCgCGg -3' miRNA: 3'- -GAGUGCGacuUCGa-CUGCGGGUUG-GU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 60364 | 0.71 | 0.682732 |
Target: 5'- -gCGCGUcGAAGCUGA-GCCCGACg- -3' miRNA: 3'- gaGUGCGaCUUCGACUgCGGGUUGgu -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 61312 | 0.82 | 0.175343 |
Target: 5'- gUCGCGCUGcagguccAGGgaGACGCCCGGCCAg -3' miRNA: 3'- gAGUGCGAC-------UUCgaCUGCGGGUUGGU- -5' |
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29400 | 5' | -55.3 | NC_006151.1 | + | 61398 | 0.72 | 0.620489 |
Target: 5'- -aCACGCUcGAGGCgaACGCCCcGCCGu -3' miRNA: 3'- gaGUGCGA-CUUCGacUGCGGGuUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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