miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 142114 0.66 0.91484
Target:  5'- -gCugGgUGAAGCccaccgcgaggaUGGCGCCCGauGCCu -3'
miRNA:   3'- gaGugCgACUUCG------------ACUGCGGGU--UGGu -5'
29400 5' -55.3 NC_006151.1 + 140474 0.71 0.679641
Target:  5'- -aCGCGCUGGacucccacaaaaccGGCUGcgacGCGCCCAccuGCCGc -3'
miRNA:   3'- gaGUGCGACU--------------UCGAC----UGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 140175 0.66 0.895951
Target:  5'- gCUCACGCUGcgcacGCUgGAC-CCCAucgugGCCAc -3'
miRNA:   3'- -GAGUGCGACuu---CGA-CUGcGGGU-----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 139203 0.66 0.91484
Target:  5'- --gGCGCUGGAGCUccuggcggcGACGCU--GCCGc -3'
miRNA:   3'- gagUGCGACUUCGA---------CUGCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 137067 0.73 0.548369
Target:  5'- -cCGCG-UGGAGCUGGCGCaCCGgcGCCAg -3'
miRNA:   3'- gaGUGCgACUUCGACUGCG-GGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 136965 0.68 0.818328
Target:  5'- -cCGCcuGCUGGAGCUGGcCGCCgcGCCGg -3'
miRNA:   3'- gaGUG--CGACUUCGACU-GCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 134635 0.66 0.902489
Target:  5'- ----aGCUGguGCUGACGCgCgAGCCGc -3'
miRNA:   3'- gagugCGACuuCGACUGCG-GgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 132805 0.67 0.85822
Target:  5'- --gGCGCUGGuacagcgcguccgGGCUGGcCGCCCGcgggacgGCCAc -3'
miRNA:   3'- gagUGCGACU-------------UCGACU-GCGGGU-------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 131124 0.67 0.851888
Target:  5'- --gGCGCggGAGGCcgcGGCGCCgCGGCCGu -3'
miRNA:   3'- gagUGCGa-CUUCGa--CUGCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 125448 0.66 0.895951
Target:  5'- gUCGCGcCUGAaccccAGCgccGugGCCaCGGCCGc -3'
miRNA:   3'- gAGUGC-GACU-----UCGa--CugCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 123872 0.67 0.859782
Target:  5'- -gCGCuGCUGcuGCUGGCGCUC-GCCGc -3'
miRNA:   3'- gaGUG-CGACuuCGACUGCGGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 122569 0.67 0.884997
Target:  5'- -gUACGCcgUGAgcgagcugcaguuuuGGCUGGCGUCCAcgaACCAg -3'
miRNA:   3'- gaGUGCG--ACU---------------UCGACUGCGGGU---UGGU- -5'
29400 5' -55.3 NC_006151.1 + 122308 0.66 0.895951
Target:  5'- cCUCACGCgGcAGCUGGCGgugcgcguggacCCCGaggacgugGCCAa -3'
miRNA:   3'- -GAGUGCGaCuUCGACUGC------------GGGU--------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 122234 0.67 0.874927
Target:  5'- uUCGaggaGCUGu-GCgUGACGgCCAACCAg -3'
miRNA:   3'- gAGUg---CGACuuCG-ACUGCgGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 121312 0.66 0.902489
Target:  5'- --gGCGCUGGAGCguggaGGCGgCC-GCCGa -3'
miRNA:   3'- gagUGCGACUUCGa----CUGCgGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 118951 0.66 0.895951
Target:  5'- --gGCGCUGucGCUGgagGCGCUCGucGCCGc -3'
miRNA:   3'- gagUGCGACuuCGAC---UGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 118256 1.08 0.003199
Target:  5'- gCUCACGCUGAAGCUGACGCCCAACCAc -3'
miRNA:   3'- -GAGUGCGACUUCGACUGCGGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 115588 0.69 0.762933
Target:  5'- gUCGCGCUcGAgcAGCUcgcgcGugGCCCAGCg- -3'
miRNA:   3'- gAGUGCGA-CU--UCGA-----CugCGGGUUGgu -5'
29400 5' -55.3 NC_006151.1 + 115175 0.67 0.882166
Target:  5'- -cCGCGCgGcAGggGGCGCuCCAGCCAg -3'
miRNA:   3'- gaGUGCGaCuUCgaCUGCG-GGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 113800 0.69 0.743409
Target:  5'- -aCGCGCUGcuGC-GGCGCCaCGGCCu -3'
miRNA:   3'- gaGUGCGACuuCGaCUGCGG-GUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.