miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 5' -51.5 NC_006151.1 + 49631 0.66 0.989203
Target:  5'- -cGCGAGUgGGGGUGGGCcguggAgGAGGUCg -3'
miRNA:   3'- cuCGCUCA-UCUCGCUUG-----UgCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 74135 0.66 0.989203
Target:  5'- -cGCGGGUGcAGCGggUGCcgGGGGUCg -3'
miRNA:   3'- cuCGCUCAUcUCGCuuGUG--CUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 73039 0.66 0.989061
Target:  5'- uGGCG-GUGGcGCGGuggggguGCGCGGGGUCc -3'
miRNA:   3'- cUCGCuCAUCuCGCU-------UGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 28660 0.66 0.987717
Target:  5'- gGGGCacGUGGGGCaAACGgCGGGAUCUg -3'
miRNA:   3'- -CUCGcuCAUCUCGcUUGU-GCUCUAGA- -5'
29402 5' -51.5 NC_006151.1 + 96104 0.66 0.987717
Target:  5'- uGAGCGGGguu-GCGGGCACGA--UCg -3'
miRNA:   3'- -CUCGCUCaucuCGCUUGUGCUcuAGa -5'
29402 5' -51.5 NC_006151.1 + 29445 0.66 0.987717
Target:  5'- cGGCGGGgAGAGgGGACGCgGAGGg-- -3'
miRNA:   3'- cUCGCUCaUCUCgCUUGUG-CUCUaga -5'
29402 5' -51.5 NC_006151.1 + 89167 0.66 0.986077
Target:  5'- cGGGCGA----GGCGGGCGCGGGgGUCg -3'
miRNA:   3'- -CUCGCUcaucUCGCUUGUGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 68918 0.66 0.986077
Target:  5'- -cGCGGGcGGAucGCGAACuCGAuGAUCUg -3'
miRNA:   3'- cuCGCUCaUCU--CGCUUGuGCU-CUAGA- -5'
29402 5' -51.5 NC_006151.1 + 10980 0.66 0.986077
Target:  5'- uGGGUGucacGGUGGAGCGGGC-CGGGggCc -3'
miRNA:   3'- -CUCGC----UCAUCUCGCUUGuGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 42793 0.66 0.986077
Target:  5'- uGGGCGGGgu-GGCGGgacGCGuCGAGGUCg -3'
miRNA:   3'- -CUCGCUCaucUCGCU---UGU-GCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 44527 0.66 0.983111
Target:  5'- cGGGCGAGaAGAGCGAuguggugguggugguGguCGAuGAUCUc -3'
miRNA:   3'- -CUCGCUCaUCUCGCU---------------UguGCU-CUAGA- -5'
29402 5' -51.5 NC_006151.1 + 90454 0.66 0.9823
Target:  5'- cAGCGGGUGGAcuCGAGCGCGcAGcgCc -3'
miRNA:   3'- cUCGCUCAUCUc-GCUUGUGC-UCuaGa -5'
29402 5' -51.5 NC_006151.1 + 84397 0.66 0.980145
Target:  5'- cGGGCGGGgagcGGGUGGGCGCGGuGAUa- -3'
miRNA:   3'- -CUCGCUCau--CUCGCUUGUGCU-CUAga -5'
29402 5' -51.5 NC_006151.1 + 60898 0.66 0.980145
Target:  5'- -cGCGAGcAGGGCGuccACGCGGGccaGUCg -3'
miRNA:   3'- cuCGCUCaUCUCGCu--UGUGCUC---UAGa -5'
29402 5' -51.5 NC_006151.1 + 72604 0.66 0.980145
Target:  5'- gGGGgGGGcAGGGCGGAgACGAcGGUCc -3'
miRNA:   3'- -CUCgCUCaUCUCGCUUgUGCU-CUAGa -5'
29402 5' -51.5 NC_006151.1 + 130933 0.67 0.9778
Target:  5'- -cGCGGGggcgGGGGCG-GCGgGGGGUCg -3'
miRNA:   3'- cuCGCUCa---UCUCGCuUGUgCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 19241 0.67 0.9778
Target:  5'- -uGCGAGUGGaAGcCGAGCGCGuGGa-- -3'
miRNA:   3'- cuCGCUCAUC-UC-GCUUGUGCuCUaga -5'
29402 5' -51.5 NC_006151.1 + 4342 0.67 0.9778
Target:  5'- cGGCGaAGgcGGcGCGGACGCGGGcgCa -3'
miRNA:   3'- cUCGC-UCauCU-CGCUUGUGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 27371 0.67 0.977058
Target:  5'- cGGGCGGGUcgacGGGCGAgaacggcggggaggGCACGGGcUCg -3'
miRNA:   3'- -CUCGCUCAu---CUCGCU--------------UGUGCUCuAGa -5'
29402 5' -51.5 NC_006151.1 + 31247 0.67 0.975256
Target:  5'- cGAGCGAGcgggcGGGCGAGC-CGGGGc-- -3'
miRNA:   3'- -CUCGCUCau---CUCGCUUGuGCUCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.