miRNA display CGI


Results 41 - 60 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 59342 0.77 0.17589
Target:  5'- cCAGCGCGcucaGGGCCGCGCGcacggGGCgCCGCGc -3'
miRNA:   3'- cGUCGUGC----UUCGGCGCGC-----UCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 64374 0.76 0.180229
Target:  5'- cGCAcGguCGAGGCCGUgGCcAGCCCGCGg -3'
miRNA:   3'- -CGU-CguGCUUCGGCG-CGcUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 105553 0.76 0.184663
Target:  5'- uGCGGCACGAcGCCcuGCGCGcGCUgGCGg -3'
miRNA:   3'- -CGUCGUGCUuCGG--CGCGCuCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 113903 0.76 0.184663
Target:  5'- cGCGGCGC-AAGacgcugaCGCGCGcGGCCCGCGa -3'
miRNA:   3'- -CGUCGUGcUUCg------GCGCGC-UCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 75391 0.76 0.188735
Target:  5'- aCGGCGCGggGCgggugcgUGCGCGGGUCCGgGa -3'
miRNA:   3'- cGUCGUGCuuCG-------GCGCGCUCGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 105748 0.76 0.189192
Target:  5'- aGCAGCGCGuGGCgGCGCGccugGGCgaCCGCGa -3'
miRNA:   3'- -CGUCGUGCuUCGgCGCGC----UCG--GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 132157 0.76 0.189192
Target:  5'- aCGGCGCGcAGCUGCGCG-GCCgGCa -3'
miRNA:   3'- cGUCGUGCuUCGGCGCGCuCGGgCGc -5'
29403 3' -61.2 NC_006151.1 + 57314 0.76 0.191031
Target:  5'- cGCGGC-CGAAGCCgcuGCGCGAcgggaagccgacaaaGUCCGCGg -3'
miRNA:   3'- -CGUCGuGCUUCGG---CGCGCU---------------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 86050 0.76 0.193819
Target:  5'- cGCAGUuCGccGCCGCcUGAGCCCGCa -3'
miRNA:   3'- -CGUCGuGCuuCGGCGcGCUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 95440 0.76 0.193819
Target:  5'- gGCgAGgGCGgcGCCGCGCGuGUCCGUGu -3'
miRNA:   3'- -CG-UCgUGCuuCGGCGCGCuCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 130837 0.76 0.198068
Target:  5'- cGCGGCGCGGAGUCgucgccgucggcgGCGCGGGCgggaCCGCa -3'
miRNA:   3'- -CGUCGUGCUUCGG-------------CGCGCUCG----GGCGc -5'
29403 3' -61.2 NC_006151.1 + 99595 0.76 0.198545
Target:  5'- gGCGGC-CGAGcGCCGCGcCGGGCUgGCGc -3'
miRNA:   3'- -CGUCGuGCUU-CGGCGC-GCUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 69328 0.76 0.203371
Target:  5'- cGCgGGCGCGucGCCGCccgcgagcgcgGCGuAGCCCGCGu -3'
miRNA:   3'- -CG-UCGUGCuuCGGCG-----------CGC-UCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 4995 0.76 0.203371
Target:  5'- aGCGGCGCuuccugcgcgGggGCCGgGCGGGCuCCGgGg -3'
miRNA:   3'- -CGUCGUG----------CuuCGGCgCGCUCG-GGCgC- -5'
29403 3' -61.2 NC_006151.1 + 38557 0.76 0.203371
Target:  5'- aGCGGCGCaaGAAgaagcGCCGCGCGcccggGGCCCGCc -3'
miRNA:   3'- -CGUCGUG--CUU-----CGGCGCGC-----UCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 84142 0.76 0.203371
Target:  5'- aGCGGCACGAggGGCUGUGCcAGCUgCGCGa -3'
miRNA:   3'- -CGUCGUGCU--UCGGCGCGcUCGG-GCGC- -5'
29403 3' -61.2 NC_006151.1 + 50001 0.76 0.203371
Target:  5'- cGCGuuuGCGCGccGCgCGCGCG-GCCCGCGc -3'
miRNA:   3'- -CGU---CGUGCuuCG-GCGCGCuCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 102572 0.75 0.208298
Target:  5'- uGC-GCGCGcccGCgCGCGCGAGuCCCGCGa -3'
miRNA:   3'- -CGuCGUGCuu-CG-GCGCGCUC-GGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 119103 0.75 0.208298
Target:  5'- uCGGCGCGuacguGAGCCGCGCGgccGGCCuCGUGg -3'
miRNA:   3'- cGUCGUGC-----UUCGGCGCGC---UCGG-GCGC- -5'
29403 3' -61.2 NC_006151.1 + 70634 0.75 0.208298
Target:  5'- gGCGGCGCcguGGCCGCGCGcgaggcGCCCGUc -3'
miRNA:   3'- -CGUCGUGcu-UCGGCGCGCu-----CGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.