miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 115923 1.1 0.001361
Target:  5'- gCUGAACUCGUCCUCGCGCAGGCCCGCc -3'
miRNA:   3'- -GACUUGAGCAGGAGCGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 18362 0.81 0.138386
Target:  5'- gCUGAACUCGUCCUCgGCGUccAGGCUCa- -3'
miRNA:   3'- -GACUUGAGCAGGAG-CGCG--UCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 116320 0.78 0.196093
Target:  5'- aUGAcGC-CG-CgCUCGCGCGGGCCCGCg -3'
miRNA:   3'- gACU-UGaGCaG-GAGCGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 52605 0.78 0.221347
Target:  5'- gUGGACgaaggCGUCgUCGCGCAGGacggCCGCg -3'
miRNA:   3'- gACUUGa----GCAGgAGCGCGUCCg---GGCG- -5'
29404 3' -58.7 NC_006151.1 + 59759 0.76 0.261302
Target:  5'- cCUGcAGCUCGUCCUCGgGCAcgucGGCCaCGa -3'
miRNA:   3'- -GAC-UUGAGCAGGAGCgCGU----CCGG-GCg -5'
29404 3' -58.7 NC_006151.1 + 53532 0.75 0.306936
Target:  5'- gUGAGC-CGcUCCagggCGCGCAGGCgCGCa -3'
miRNA:   3'- gACUUGaGC-AGGa---GCGCGUCCGgGCG- -5'
29404 3' -58.7 NC_006151.1 + 58861 0.75 0.313932
Target:  5'- -gGAGCUCGcCCggCGCGcCGGGUCCGUc -3'
miRNA:   3'- gaCUUGAGCaGGa-GCGC-GUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 8282 0.75 0.321048
Target:  5'- -gGAAagagUGUCCcCGCGCGGGCgCCGCg -3'
miRNA:   3'- gaCUUga--GCAGGaGCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 62081 0.74 0.335639
Target:  5'- -cGAACgUCGUCCUCgGCGCGgucGGCCUGg -3'
miRNA:   3'- gaCUUG-AGCAGGAG-CGCGU---CCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 128582 0.74 0.335639
Target:  5'- -cGGGCgacaUCGU-CUCGCGC-GGCCCGCg -3'
miRNA:   3'- gaCUUG----AGCAgGAGCGCGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 47265 0.74 0.343115
Target:  5'- aUGGAC-CGcUCCggCGCGCAGcGUCCGCg -3'
miRNA:   3'- gACUUGaGC-AGGa-GCGCGUC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 116927 0.74 0.343115
Target:  5'- -cGGGC-CGUCCUCGuCGCGGGCCagGUu -3'
miRNA:   3'- gaCUUGaGCAGGAGC-GCGUCCGGg-CG- -5'
29404 3' -58.7 NC_006151.1 + 127302 0.74 0.358423
Target:  5'- gCUGGuacagGC-CGUCgUcCGCGCGGGUCCGCg -3'
miRNA:   3'- -GACU-----UGaGCAGgA-GCGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 132419 0.74 0.366254
Target:  5'- -gGAGCUUGcCCUCGuCGCGGcgcGCCUGCg -3'
miRNA:   3'- gaCUUGAGCaGGAGC-GCGUC---CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 73185 0.74 0.369419
Target:  5'- aUGAACUCGcacaccgacugcugCC-CGCGggcCAGGCCCGCg -3'
miRNA:   3'- gACUUGAGCa-------------GGaGCGC---GUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 95595 0.74 0.374202
Target:  5'- -gGcGCUCGUaCUCGCGCgcaaagucGGGCCCGUg -3'
miRNA:   3'- gaCuUGAGCAgGAGCGCG--------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 62728 0.74 0.374202
Target:  5'- ----cCUCGUCC-CGCGUugAGGCCCGUc -3'
miRNA:   3'- gacuuGAGCAGGaGCGCG--UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 129160 0.73 0.382267
Target:  5'- aCUGGcuCUCGgCCacgUCGCGCAGGgCCGCc -3'
miRNA:   3'- -GACUu-GAGCaGG---AGCGCGUCCgGGCG- -5'
29404 3' -58.7 NC_006151.1 + 52362 0.73 0.398739
Target:  5'- -----gUCGUCCgccggCGCGCccccgGGGCCCGCg -3'
miRNA:   3'- gacuugAGCAGGa----GCGCG-----UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 91214 0.73 0.424282
Target:  5'- uUGAACUCGUgCUUGUagacGCAGGCgaCGCu -3'
miRNA:   3'- gACUUGAGCAgGAGCG----CGUCCGg-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.