miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 91214 0.73 0.424282
Target:  5'- uUGAACUCGUgCUUGUagacGCAGGCgaCGCu -3'
miRNA:   3'- gACUUGAGCAgGAGCG----CGUCCGg-GCG- -5'
29404 3' -58.7 NC_006151.1 + 36856 0.72 0.441845
Target:  5'- -cGGACUCGgCCUCGCcggggacgGCGGGgcgccCCCGCa -3'
miRNA:   3'- gaCUUGAGCaGGAGCG--------CGUCC-----GGGCG- -5'
29404 3' -58.7 NC_006151.1 + 120314 0.72 0.468939
Target:  5'- -cGGGCUCGggcagCCUcucggacgcCGCGCGcGCCCGCg -3'
miRNA:   3'- gaCUUGAGCa----GGA---------GCGCGUcCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 113525 0.71 0.486531
Target:  5'- -cGGACgcgCGcuUCCUgGCGCugaugcgcgccgcGGGCCCGCg -3'
miRNA:   3'- gaCUUGa--GC--AGGAgCGCG-------------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 141303 0.71 0.496858
Target:  5'- gUGGGCUCGUacgCGgGCGGGUCCGg -3'
miRNA:   3'- gACUUGAGCAggaGCgCGUCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 105515 0.71 0.496858
Target:  5'- -cGAGCUCGaCCgcauggcggCGCGCaucGGGCCCGa -3'
miRNA:   3'- gaCUUGAGCaGGa--------GCGCG---UCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 82602 0.71 0.506331
Target:  5'- -cGAACagGgugggCCcgCGCGCGGGCgCCGCg -3'
miRNA:   3'- gaCUUGagCa----GGa-GCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 129777 0.71 0.506331
Target:  5'- -cGAGggCGUCgCUCccgccgGCGUGGGCCCGCa -3'
miRNA:   3'- gaCUUgaGCAG-GAG------CGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 88515 0.71 0.506331
Target:  5'- -cGGguGCUCGUCCgcgaaccaGCGCAGGCgCaCGCu -3'
miRNA:   3'- gaCU--UGAGCAGGag------CGCGUCCG-G-GCG- -5'
29404 3' -58.7 NC_006151.1 + 26957 0.71 0.515881
Target:  5'- -cGcGCUCGUUgagCUCGCGCAGcGCgCUGCg -3'
miRNA:   3'- gaCuUGAGCAG---GAGCGCGUC-CG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 122701 0.71 0.515881
Target:  5'- -gGAGCUCGcgcUCUUCGgGCGgcGGCCCGa -3'
miRNA:   3'- gaCUUGAGC---AGGAGCgCGU--CCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 124998 0.71 0.515881
Target:  5'- cCUGGGCgacugCGUCCUC-CGCgAGGCCuCGg -3'
miRNA:   3'- -GACUUGa----GCAGGAGcGCG-UCCGG-GCg -5'
29404 3' -58.7 NC_006151.1 + 69857 0.71 0.529369
Target:  5'- -aGGACUCGUCguaggugaagaccagCUCGCGCGcGCCCacGCg -3'
miRNA:   3'- gaCUUGAGCAG---------------GAGCGCGUcCGGG--CG- -5'
29404 3' -58.7 NC_006151.1 + 58234 0.71 0.535191
Target:  5'- -cGAGCacgCGcgCCgccaCGCGCcGGCCCGCg -3'
miRNA:   3'- gaCUUGa--GCa-GGa---GCGCGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 36310 0.71 0.535191
Target:  5'- ----cCUCGUCCUCGgGCcccggucccGGGCCgGCu -3'
miRNA:   3'- gacuuGAGCAGGAGCgCG---------UCCGGgCG- -5'
29404 3' -58.7 NC_006151.1 + 125175 0.7 0.553765
Target:  5'- -cGAGCUCGagcgCCUCGgccucgccggcguCGUGGGCcCCGCg -3'
miRNA:   3'- gaCUUGAGCa---GGAGC-------------GCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 102398 0.7 0.554748
Target:  5'- gCUGGucGCggcgCG-CgUCGCGC-GGCCCGCg -3'
miRNA:   3'- -GACU--UGa---GCaGgAGCGCGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 83168 0.7 0.554748
Target:  5'- -gGAGCUCGgggUCgUCGCGCGGG-CgGCa -3'
miRNA:   3'- gaCUUGAGC---AGgAGCGCGUCCgGgCG- -5'
29404 3' -58.7 NC_006151.1 + 20531 0.7 0.558685
Target:  5'- gUGAACacggCGUCCUcggcgggguccacgaCGCGCAGGCUguCGUg -3'
miRNA:   3'- gACUUGa---GCAGGA---------------GCGCGUCCGG--GCG- -5'
29404 3' -58.7 NC_006151.1 + 136027 0.7 0.564606
Target:  5'- cCUGAccaUgGUCCUCGaGCAGgugcGCCCGCg -3'
miRNA:   3'- -GACUug-AgCAGGAGCgCGUC----CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.