miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 26587 0.66 0.789405
Target:  5'- -cGAGC-CGUCCUCG-GgGGGCUCa- -3'
miRNA:   3'- gaCUUGaGCAGGAGCgCgUCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 30903 0.66 0.789405
Target:  5'- -gGAGCgcgCGguagcgCC-CGCGgGcGGCCCGCg -3'
miRNA:   3'- gaCUUGa--GCa-----GGaGCGCgU-CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 90872 0.66 0.789405
Target:  5'- uUGAACgUGagCUCgGCGUucccGGCCCGCa -3'
miRNA:   3'- gACUUGaGCagGAG-CGCGu---CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 130185 0.66 0.789405
Target:  5'- -cGaAGCggaCGUCCUCGgGguG-CCCGCu -3'
miRNA:   3'- gaC-UUGa--GCAGGAGCgCguCcGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 121897 0.66 0.789405
Target:  5'- cCUGGcGCUCG-CgUaCGCGCGGGCcgagggggaCCGCg -3'
miRNA:   3'- -GACU-UGAGCaGgA-GCGCGUCCG---------GGCG- -5'
29404 3' -58.7 NC_006151.1 + 128529 0.66 0.780383
Target:  5'- -cGAGCcCGaggCCaCG-GCGGGCCCGCc -3'
miRNA:   3'- gaCUUGaGCa--GGaGCgCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 75773 0.66 0.780383
Target:  5'- -cGGGCaCGUCCgCGUGCGuGUCCGCc -3'
miRNA:   3'- gaCUUGaGCAGGaGCGCGUcCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 117426 0.66 0.780383
Target:  5'- gUGAccAC-CGUgCCguuggggaaGCGCGGGUCCGCg -3'
miRNA:   3'- gACU--UGaGCA-GGag-------CGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 67822 0.66 0.780383
Target:  5'- gCUGccGCcgUCGUCgUCGCGgGGGCUCaGCa -3'
miRNA:   3'- -GACu-UG--AGCAGgAGCGCgUCCGGG-CG- -5'
29404 3' -58.7 NC_006151.1 + 60998 0.66 0.771233
Target:  5'- uUGAucagguGCUCGUCCaCGCgguGCAGGCUCu- -3'
miRNA:   3'- gACU------UGAGCAGGaGCG---CGUCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 78703 0.66 0.771233
Target:  5'- -gGGGcCUCGUCgC-CGCGaCGGcGCCCGUg -3'
miRNA:   3'- gaCUU-GAGCAG-GaGCGC-GUC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 60213 0.66 0.771233
Target:  5'- aUGGGCUCG-CCgcgCGCGCcGGagCCGUc -3'
miRNA:   3'- gACUUGAGCaGGa--GCGCGuCCg-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 82423 0.66 0.771233
Target:  5'- -cGAGaggcgCGggCgCUCGCGCGGGCgCUGCa -3'
miRNA:   3'- gaCUUga---GCa-G-GAGCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 136809 0.66 0.771233
Target:  5'- -cGcGCUCGcggCCgacgcgcCGCGCGGGCuCUGCg -3'
miRNA:   3'- gaCuUGAGCa--GGa------GCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 139754 0.67 0.761964
Target:  5'- -cGGA-UCGUCCggaCG-GCGGGCCCGa -3'
miRNA:   3'- gaCUUgAGCAGGa--GCgCGUCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 94949 0.67 0.761964
Target:  5'- -cGGACgcgcagcgCGUCC-CaGCGCAucGGCUCGCg -3'
miRNA:   3'- gaCUUGa-------GCAGGaG-CGCGU--CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 84576 0.67 0.761964
Target:  5'- -aGGGcCUCGacgcgcgCCUCGCGCuGGCgCaCGCg -3'
miRNA:   3'- gaCUU-GAGCa------GGAGCGCGuCCG-G-GCG- -5'
29404 3' -58.7 NC_006151.1 + 60021 0.67 0.761964
Target:  5'- uUGAcGCUCGUCagCGUGCAGcGCUCGa -3'
miRNA:   3'- gACU-UGAGCAGgaGCGCGUC-CGGGCg -5'
29404 3' -58.7 NC_006151.1 + 72012 0.67 0.761964
Target:  5'- gCUGAagaccACgUCGgcgCCcCGCGCGGGCgccCCGCc -3'
miRNA:   3'- -GACU-----UG-AGCa--GGaGCGCGUCCG---GGCG- -5'
29404 3' -58.7 NC_006151.1 + 69447 0.67 0.761964
Target:  5'- -cGuucgCGUCCUCGCGCgccgcGGGCgCCGg -3'
miRNA:   3'- gaCuugaGCAGGAGCGCG-----UCCG-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.