miRNA display CGI


Results 21 - 40 of 159 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 27231 0.67 0.723867
Target:  5'- gUGGACgCGcaccUCCUCggggucggGCGgGGGCCCGUa -3'
miRNA:   3'- gACUUGaGC----AGGAG--------CGCgUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 28556 0.66 0.807031
Target:  5'- -gGAGC-CGUgCC-CGCGUcccgGGaGCCCGCa -3'
miRNA:   3'- gaCUUGaGCA-GGaGCGCG----UC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 29962 0.66 0.815619
Target:  5'- -cGAGCUCGgaCCgcgGCGauggugaauGGGCCCGCg -3'
miRNA:   3'- gaCUUGAGCa-GGag-CGCg--------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 30903 0.66 0.789405
Target:  5'- -gGAGCgcgCGguagcgCC-CGCGgGcGGCCCGCg -3'
miRNA:   3'- gaCUUGa--GCa-----GGaGCGCgU-CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 33903 0.69 0.608439
Target:  5'- -gGGGcCUCGcgCCUcCGCGUccggcgggcggaucgAGGCCCGCg -3'
miRNA:   3'- gaCUU-GAGCa-GGA-GCGCG---------------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 34002 0.68 0.664612
Target:  5'- -gGAGgggCGUCCcggCGCGCcGGCCCGg -3'
miRNA:   3'- gaCUUga-GCAGGa--GCGCGuCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 36310 0.71 0.535191
Target:  5'- ----cCUCGUCCUCGgGCcccggucccGGGCCgGCu -3'
miRNA:   3'- gacuuGAGCAGGAGCgCG---------UCCGGgCG- -5'
29404 3' -58.7 NC_006151.1 + 36856 0.72 0.441845
Target:  5'- -cGGACUCGgCCUCGCcggggacgGCGGGgcgccCCCGCa -3'
miRNA:   3'- gaCUUGAGCaGGAGCG--------CGUCC-----GGGCG- -5'
29404 3' -58.7 NC_006151.1 + 38289 0.68 0.674599
Target:  5'- --cGGCUCG-CCgaggccgcCGCGCggcccGGGCCCGCg -3'
miRNA:   3'- gacUUGAGCaGGa-------GCGCG-----UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 38555 0.66 0.792976
Target:  5'- -cGAGCggcgcaagaagaagCG-CCgCGCGCccgGGGCCCGCc -3'
miRNA:   3'- gaCUUGa-------------GCaGGaGCGCG---UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 39508 0.66 0.789405
Target:  5'- gCUGGACUCuagcUCCaUCGUGgGcccGGCCUGCu -3'
miRNA:   3'- -GACUUGAGc---AGG-AGCGCgU---CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 39745 0.67 0.743102
Target:  5'- -cGGGCUCGgggacccggaCUUUGaCGCGGGCgCCGCc -3'
miRNA:   3'- gaCUUGAGCa---------GGAGC-GCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 39808 0.69 0.64457
Target:  5'- -gGGGCUCGgcgCCcCGCuGC-GGCCCGUc -3'
miRNA:   3'- gaCUUGAGCa--GGaGCG-CGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 47265 0.74 0.343115
Target:  5'- aUGGAC-CGcUCCggCGCGCAGcGUCCGCg -3'
miRNA:   3'- gACUUGaGC-AGGa-GCGCGUC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 49985 0.7 0.598427
Target:  5'- cCUGcACcaagaCGUCCgcguuugcgcgccgCGCGCGcGGCCCGCg -3'
miRNA:   3'- -GACuUGa----GCAGGa-------------GCGCGU-CCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 50391 0.68 0.6546
Target:  5'- -cGGGCcccgCgGUCCUCGCGC-GGCCCc- -3'
miRNA:   3'- gaCUUGa---G-CAGGAGCGCGuCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 51118 0.69 0.62449
Target:  5'- -aGGAUgCGggCCUCGCGCAGGgcguCCCGg -3'
miRNA:   3'- gaCUUGaGCa-GGAGCGCGUCC----GGGCg -5'
29404 3' -58.7 NC_006151.1 + 51281 0.67 0.743102
Target:  5'- -cGAGCgCGcCCUCGgGggccgccggcCAGGUCCGCg -3'
miRNA:   3'- gaCUUGaGCaGGAGCgC----------GUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 52362 0.73 0.398739
Target:  5'- -----gUCGUCCgccggCGCGCccccgGGGCCCGCg -3'
miRNA:   3'- gacuugAGCAGGa----GCGCG-----UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 52605 0.78 0.221347
Target:  5'- gUGGACgaaggCGUCgUCGCGCAGGacggCCGCg -3'
miRNA:   3'- gACUUGa----GCAGgAGCGCGUCCg---GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.