miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 2758 0.69 0.604432
Target:  5'- -gGAGCUagaGUCCagcacggcCGCGCGGaGCUCGCg -3'
miRNA:   3'- gaCUUGAg--CAGGa-------GCGCGUC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 3624 0.67 0.723867
Target:  5'- gUG-GC-CGUCCcCGCGgAGGgCCGCg -3'
miRNA:   3'- gACuUGaGCAGGaGCGCgUCCgGGCG- -5'
29404 3' -58.7 NC_006151.1 + 3653 0.68 0.688524
Target:  5'- -aGAGCcccUCGUCCUCcucgccguccccgggGCgGCGGGCCCcggGCg -3'
miRNA:   3'- gaCUUG---AGCAGGAG---------------CG-CGUCCGGG---CG- -5'
29404 3' -58.7 NC_006151.1 + 3935 0.67 0.733527
Target:  5'- -gGGGCagG-CCggGCGCGGGCuCCGCg -3'
miRNA:   3'- gaCUUGagCaGGagCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 4824 0.67 0.733527
Target:  5'- -cGGACgUCGUCCUCGuCcCAGaGCCCcucGCg -3'
miRNA:   3'- gaCUUG-AGCAGGAGC-GcGUC-CGGG---CG- -5'
29404 3' -58.7 NC_006151.1 + 5541 0.7 0.584453
Target:  5'- -cGAGC-CG-CCUCGCggcgGCGGGCUCGUc -3'
miRNA:   3'- gaCUUGaGCaGGAGCG----CGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 7137 0.67 0.743102
Target:  5'- aUGAGaUUGUCCgaaaaucccUCGCGCGGGCgCGa -3'
miRNA:   3'- gACUUgAGCAGG---------AGCGCGUCCGgGCg -5'
29404 3' -58.7 NC_006151.1 + 8282 0.75 0.321048
Target:  5'- -gGAAagagUGUCCcCGCGCGGGCgCCGCg -3'
miRNA:   3'- gaCUUga--GCAGGaGCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 12271 0.68 0.664612
Target:  5'- ----uCUCGUCCagGcCGCGGGCCCa- -3'
miRNA:   3'- gacuuGAGCAGGagC-GCGUCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 13085 0.68 0.663612
Target:  5'- -aGAGCgggCGUCCgggaagggagaggUCGCgGCGGGUCaCGCg -3'
miRNA:   3'- gaCUUGa--GCAGG-------------AGCG-CGUCCGG-GCG- -5'
29404 3' -58.7 NC_006151.1 + 13419 0.7 0.594429
Target:  5'- -gGAGC-CGggCC-CGCGUccccgGGGCCCGCa -3'
miRNA:   3'- gaCUUGaGCa-GGaGCGCG-----UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 18362 0.81 0.138386
Target:  5'- gCUGAACUCGUCCUCgGCGUccAGGCUCa- -3'
miRNA:   3'- -GACUUGAGCAGGAG-CGCG--UCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 19095 0.66 0.79829
Target:  5'- -aGGGCUCGUacaCGUaguacaGCAGGCaCCGCg -3'
miRNA:   3'- gaCUUGAGCAggaGCG------CGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 19269 0.68 0.684553
Target:  5'- -gGGGCUCGUgg-CGCGCGgGGCCCa- -3'
miRNA:   3'- gaCUUGAGCAggaGCGCGU-CCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 19819 0.68 0.674599
Target:  5'- -gGGACUCGggaCCUCG-GUgacgGGGCCCGg -3'
miRNA:   3'- gaCUUGAGCa--GGAGCgCG----UCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 20531 0.7 0.558685
Target:  5'- gUGAACacggCGUCCUcggcgggguccacgaCGCGCAGGCUguCGUg -3'
miRNA:   3'- gACUUGa---GCAGGA---------------GCGCGUCCGG--GCG- -5'
29404 3' -58.7 NC_006151.1 + 21920 0.67 0.733527
Target:  5'- --cAGCUCGUCCUC-CGUGGGgaacauguagUCCGCg -3'
miRNA:   3'- gacUUGAGCAGGAGcGCGUCC----------GGGCG- -5'
29404 3' -58.7 NC_006151.1 + 24365 0.67 0.743102
Target:  5'- -cGGGCUCGUCCccgccggugaUCGUcuugggGUAGGCCaGCg -3'
miRNA:   3'- gaCUUGAGCAGG----------AGCG------CGUCCGGgCG- -5'
29404 3' -58.7 NC_006151.1 + 26587 0.66 0.789405
Target:  5'- -cGAGC-CGUCCUCG-GgGGGCUCa- -3'
miRNA:   3'- gaCUUGaGCAGGAGCgCgUCCGGGcg -5'
29404 3' -58.7 NC_006151.1 + 26957 0.71 0.515881
Target:  5'- -cGcGCUCGUUgagCUCGCGCAGcGCgCUGCg -3'
miRNA:   3'- gaCuUGAGCAG---GAGCGCGUC-CG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.