miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 3' -58.7 NC_006151.1 + 141303 0.71 0.496858
Target:  5'- gUGGGCUCGUacgCGgGCGGGUCCGg -3'
miRNA:   3'- gACUUGAGCAggaGCgCGUCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 139754 0.67 0.761964
Target:  5'- -cGGA-UCGUCCggaCG-GCGGGCCCGa -3'
miRNA:   3'- gaCUUgAGCAGGa--GCgCGUCCGGGCg -5'
29404 3' -58.7 NC_006151.1 + 137253 0.7 0.594429
Target:  5'- -cGAcuUUCG-CCUCGCGCgcccGGuGCCCGCg -3'
miRNA:   3'- gaCUu-GAGCaGGAGCGCG----UC-CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 136809 0.66 0.771233
Target:  5'- -cGcGCUCGcggCCgacgcgcCGCGCGGGCuCUGCg -3'
miRNA:   3'- gaCuUGAGCa--GGa------GCGCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 136405 0.68 0.674599
Target:  5'- cCUGAGCgg--CUaCGCGCGGGgcCCCGCg -3'
miRNA:   3'- -GACUUGagcaGGaGCGCGUCC--GGGCG- -5'
29404 3' -58.7 NC_006151.1 + 136027 0.7 0.564606
Target:  5'- cCUGAccaUgGUCCUCGaGCAGgugcGCCCGCg -3'
miRNA:   3'- -GACUug-AgCAGGAGCgCGUC----CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 135872 0.67 0.743102
Target:  5'- gUGGccagCGUCCgCGUGC-GGCCCGUg -3'
miRNA:   3'- gACUuga-GCAGGaGCGCGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 134825 0.68 0.664612
Target:  5'- -cGGACgguggCGaCCgcgCGCGCacacacgcgGGGCCCGCu -3'
miRNA:   3'- gaCUUGa----GCaGGa--GCGCG---------UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 134739 0.67 0.714131
Target:  5'- -gGGACuuugUCGcCCcgagcagCGCGCgcgGGGCCCGCg -3'
miRNA:   3'- gaCUUG----AGCaGGa------GCGCG---UCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 134609 0.67 0.733527
Target:  5'- cCUGGAgUCGggCCa-GCGCGuGGCCCaGCu -3'
miRNA:   3'- -GACUUgAGCa-GGagCGCGU-CCGGG-CG- -5'
29404 3' -58.7 NC_006151.1 + 132493 0.68 0.684553
Target:  5'- -cGcGCguagCGcUCCUCGCGC--GCCCGCa -3'
miRNA:   3'- gaCuUGa---GC-AGGAGCGCGucCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 132419 0.74 0.366254
Target:  5'- -gGAGCUUGcCCUCGuCGCGGcgcGCCUGCg -3'
miRNA:   3'- gaCUUGAGCaGGAGC-GCGUC---CGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 130185 0.66 0.789405
Target:  5'- -cGaAGCggaCGUCCUCGgGguG-CCCGCu -3'
miRNA:   3'- gaC-UUGa--GCAGGAGCgCguCcGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 129777 0.71 0.506331
Target:  5'- -cGAGggCGUCgCUCccgccgGCGUGGGCCCGCa -3'
miRNA:   3'- gaCUUgaGCAG-GAG------CGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 129160 0.73 0.382267
Target:  5'- aCUGGcuCUCGgCCacgUCGCGCAGGgCCGCc -3'
miRNA:   3'- -GACUu-GAGCaGG---AGCGCGUCCgGGCG- -5'
29404 3' -58.7 NC_006151.1 + 128582 0.74 0.335639
Target:  5'- -cGGGCgacaUCGU-CUCGCGC-GGCCCGCg -3'
miRNA:   3'- gaCUUG----AGCAgGAGCGCGuCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 128529 0.66 0.780383
Target:  5'- -cGAGCcCGaggCCaCG-GCGGGCCCGCc -3'
miRNA:   3'- gaCUUGaGCa--GGaGCgCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 127302 0.74 0.358423
Target:  5'- gCUGGuacagGC-CGUCgUcCGCGCGGGUCCGCg -3'
miRNA:   3'- -GACU-----UGaGCAGgA-GCGCGUCCGGGCG- -5'
29404 3' -58.7 NC_006151.1 + 125175 0.7 0.553765
Target:  5'- -cGAGCUCGagcgCCUCGgccucgccggcguCGUGGGCcCCGCg -3'
miRNA:   3'- gaCUUGAGCa---GGAGC-------------GCGUCCG-GGCG- -5'
29404 3' -58.7 NC_006151.1 + 124998 0.71 0.515881
Target:  5'- cCUGGGCgacugCGUCCUC-CGCgAGGCCuCGg -3'
miRNA:   3'- -GACUUGa----GCAGGAGcGCG-UCCGG-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.