Results 21 - 40 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29404 | 3' | -58.7 | NC_006151.1 | + | 55156 | 0.66 | 0.815619 |
Target: 5'- gUGcGCUCGUaCCUCGaCGagaccgGGGCgCGCa -3' miRNA: 3'- gACuUGAGCA-GGAGC-GCg-----UCCGgGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 29962 | 0.66 | 0.815619 |
Target: 5'- -cGAGCUCGgaCCgcgGCGauggugaauGGGCCCGCg -3' miRNA: 3'- gaCUUGAGCa-GGag-CGCg--------UCCGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 121825 | 0.66 | 0.815619 |
Target: 5'- gCUGAugUgcCGcuaCCUCGCGCGgcGGCugCCGCu -3' miRNA: 3'- -GACUugA--GCa--GGAGCGCGU--CCG--GGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 68211 | 0.66 | 0.815619 |
Target: 5'- gUGGaaGCggcccugCG-CCagGCGCAGcGCCCGCg -3' miRNA: 3'- gACU--UGa------GCaGGagCGCGUC-CGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 75638 | 0.66 | 0.807031 |
Target: 5'- -cGGGCUUGcCgUCGuCGgGGGCCgGCu -3' miRNA: 3'- gaCUUGAGCaGgAGC-GCgUCCGGgCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 74594 | 0.66 | 0.807031 |
Target: 5'- gUGAACUCG-CCgaugaggCGcCGCAgGGCgUGCa -3' miRNA: 3'- gACUUGAGCaGGa------GC-GCGU-CCGgGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 28556 | 0.66 | 0.807031 |
Target: 5'- -gGAGC-CGUgCC-CGCGUcccgGGaGCCCGCa -3' miRNA: 3'- gaCUUGaGCA-GGaGCGCG----UC-CGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 72365 | 0.66 | 0.79829 |
Target: 5'- -aGGGCagcgCGaCCUCGCGCAGcGUCgCGUg -3' miRNA: 3'- gaCUUGa---GCaGGAGCGCGUC-CGG-GCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 88385 | 0.66 | 0.79829 |
Target: 5'- -cGAGCgCGUCCgcgGCGUccgcggccgcgAGGCCCGg -3' miRNA: 3'- gaCUUGaGCAGGag-CGCG-----------UCCGGGCg -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 123510 | 0.66 | 0.79829 |
Target: 5'- -gGAGCUgGcgcgCUUCaUGguGGCCCGCg -3' miRNA: 3'- gaCUUGAgCa---GGAGcGCguCCGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 107077 | 0.66 | 0.805295 |
Target: 5'- gUGGACUCGcagCUggcggugUCGCGCgugcucuGGGCgCCGCc -3' miRNA: 3'- gACUUGAGCa--GG-------AGCGCG-------UCCG-GGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 53638 | 0.66 | 0.807031 |
Target: 5'- uCUGcAGCUCGcgcaCCgUCG-GCGGGCUCGUg -3' miRNA: 3'- -GAC-UUGAGCa---GG-AGCgCGUCCGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 115859 | 0.66 | 0.807031 |
Target: 5'- -aGAGCagGcUCUCGCGCAccCCCGCg -3' miRNA: 3'- gaCUUGagCaGGAGCGCGUccGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 117232 | 0.66 | 0.807031 |
Target: 5'- -cGAcGCgcgCGUCCacgUCG-GCGGGCCCGa -3' miRNA: 3'- gaCU-UGa--GCAGG---AGCgCGUCCGGGCg -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 72012 | 0.67 | 0.761964 |
Target: 5'- gCUGAagaccACgUCGgcgCCcCGCGCGGGCgccCCGCc -3' miRNA: 3'- -GACU-----UG-AGCa--GGaGCGCGUCCG---GGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 60021 | 0.67 | 0.761964 |
Target: 5'- uUGAcGCUCGUCagCGUGCAGcGCUCGa -3' miRNA: 3'- gACU-UGAGCAGgaGCGCGUC-CGGGCg -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 84576 | 0.67 | 0.761964 |
Target: 5'- -aGGGcCUCGacgcgcgCCUCGCGCuGGCgCaCGCg -3' miRNA: 3'- gaCUU-GAGCa------GGAGCGCGuCCG-G-GCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 94949 | 0.67 | 0.761964 |
Target: 5'- -cGGACgcgcagcgCGUCC-CaGCGCAucGGCUCGCg -3' miRNA: 3'- gaCUUGa-------GCAGGaG-CGCGU--CCGGGCG- -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 139754 | 0.67 | 0.761964 |
Target: 5'- -cGGA-UCGUCCggaCG-GCGGGCCCGa -3' miRNA: 3'- gaCUUgAGCAGGa--GCgCGUCCGGGCg -5' |
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29404 | 3' | -58.7 | NC_006151.1 | + | 69447 | 0.67 | 0.761964 |
Target: 5'- -cGuucgCGUCCUCGCGCgccgcGGGCgCCGg -3' miRNA: 3'- gaCuugaGCAGGAGCGCG-----UCCG-GGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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