Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29404 | 5' | -54 | NC_006151.1 | + | 134992 | 0.72 | 0.714217 |
Target: 5'- cGgGCGGGCG-CGUcuuggcgGggGCGCGGGggGg -3' miRNA: 3'- -CgCGCUCGCaGCA-------CuuCGUGUCCaaC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 133486 | 0.7 | 0.783632 |
Target: 5'- cCGCGGGCGUCaccuUGGcGGCGCGGGggGc -3' miRNA: 3'- cGCGCUCGCAGc---ACU-UCGUGUCCaaC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 130523 | 0.66 | 0.950159 |
Target: 5'- gGCGCGGGCGUCGcGuacacgcccccGCGCgAGGgcGg -3' miRNA: 3'- -CGCGCUCGCAGCaCuu---------CGUG-UCCaaC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 130088 | 0.74 | 0.616209 |
Target: 5'- gGCGCGAGCagcucgcgcuccucgGcCGUGAAGCcCGGGUUc -3' miRNA: 3'- -CGCGCUCG---------------CaGCACUUCGuGUCCAAc -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 130020 | 0.7 | 0.811034 |
Target: 5'- cGCGCGccacGGcCGUCGUGAgccAGCGCAGcGcgUGg -3' miRNA: 3'- -CGCGC----UC-GCAGCACU---UCGUGUC-Ca-AC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 129501 | 0.66 | 0.950999 |
Target: 5'- aGCGCGGGCG-CGaUGAcgAGCcgcuugccgccgACGGGggGg -3' miRNA: 3'- -CGCGCUCGCaGC-ACU--UCG------------UGUCCaaC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 128277 | 0.67 | 0.921574 |
Target: 5'- cGCGCGcAGCGcCGc---GCGCAGGUa- -3' miRNA: 3'- -CGCGC-UCGCaGCacuuCGUGUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 128224 | 0.67 | 0.921574 |
Target: 5'- uGCGaCGAGC-UCGUG-GGCGcCAGGUc- -3' miRNA: 3'- -CGC-GCUCGcAGCACuUCGU-GUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 127927 | 0.66 | 0.955056 |
Target: 5'- aGCGgGGGCGgCGaGAcgGGCACGGGc-- -3' miRNA: 3'- -CGCgCUCGCaGCaCU--UCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 123271 | 0.69 | 0.84519 |
Target: 5'- cGCGCGGGCaccGUCGUGGacgAGCGCGagacGGg-- -3' miRNA: 3'- -CGCGCUCG---CAGCACU---UCGUGU----CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 119120 | 0.68 | 0.890324 |
Target: 5'- cGCGCGgccGGCcUCGUgGggGCGCuGGUg- -3' miRNA: 3'- -CGCGC---UCGcAGCA-CuuCGUGuCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 117423 | 0.67 | 0.931847 |
Target: 5'- aGCGUGAccaccguGcCGUUGggGAAGCGCGGGUc- -3' miRNA: 3'- -CGCGCU-------C-GCAGCa-CUUCGUGUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 117237 | 0.66 | 0.942167 |
Target: 5'- cGCGCGuccaCGUCGgcgggcccGAGGCGCGGGc-- -3' miRNA: 3'- -CGCGCuc--GCAGCa-------CUUCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 115960 | 1.1 | 0.003514 |
Target: 5'- aGCGCGAGCGUCGUGAAGCACAGGUUGu -3' miRNA: 3'- -CGCGCUCGCAGCACUUCGUGUCCAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 115280 | 0.67 | 0.915811 |
Target: 5'- cGCGCGuacGCGUUGaUGAAGgCGCAG-UUGu -3' miRNA: 3'- -CGCGCu--CGCAGC-ACUUC-GUGUCcAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 106766 | 0.66 | 0.955056 |
Target: 5'- aGCGCGAcGCG-CGUGA-GCGCcuGGa-- -3' miRNA: 3'- -CGCGCU-CGCaGCACUuCGUGu-CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 100223 | 0.72 | 0.684622 |
Target: 5'- cCGCGGGCGcCGUGGccgAGCGCGuGGUg- -3' miRNA: 3'- cGCGCUCGCaGCACU---UCGUGU-CCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 98931 | 0.67 | 0.921574 |
Target: 5'- uGCGCGAGCaguUCGccGAggcGGCGCGGGccgUGg -3' miRNA: 3'- -CGCGCUCGc--AGCa-CU---UCGUGUCCa--AC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 94756 | 0.67 | 0.925463 |
Target: 5'- cGCGCGgaaacaggcgccgcAGCGUCuccauGAGCGgCAGGUUGg -3' miRNA: 3'- -CGCGC--------------UCGCAGcac--UUCGU-GUCCAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 93745 | 0.73 | 0.653612 |
Target: 5'- aUGCGGGCcUCGUcGggGCGCGGGg-- -3' miRNA: 3'- cGCGCUCGcAGCA-CuuCGUGUCCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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