miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 52372 0.7 0.786919
Target:  5'- -gGCGCGcccccgggGCCCGcGGggGCGGcgGGc -3'
miRNA:   3'- caUGCGCua------CGGGC-UCuuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 122220 0.7 0.777553
Target:  5'- cGUGCGCGGUGUgcuUCGAGGAGCuGugcGUGAc -3'
miRNA:   3'- -CAUGCGCUACG---GGCUCUUCGcC---UACU- -5'
29405 5' -54.6 NC_006151.1 + 117145 0.7 0.762294
Target:  5'- gGUGCGCGAccaggcgcccgcuguUGCUCGAGAcGCGGuaGAa -3'
miRNA:   3'- -CAUGCGCU---------------ACGGGCUCUuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 28873 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 28592 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 34610 0.7 0.748692
Target:  5'- -cGCGCGccgaGCgCGAGgcGCGGGUGGg -3'
miRNA:   3'- caUGCGCua--CGgGCUCuuCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 24307 0.71 0.738849
Target:  5'- --uCGgGGUGCaccCCGAGGGcGCGGAUGAg -3'
miRNA:   3'- cauGCgCUACG---GGCUCUU-CGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 134192 0.71 0.728909
Target:  5'- aUACGCGAUGCUCGucgcgcagcgcGGggGCGGu--- -3'
miRNA:   3'- cAUGCGCUACGGGC-----------UCuuCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 127264 0.71 0.728909
Target:  5'- -cGCGCGGUGgCCGGuGAGGUcGAUGAc -3'
miRNA:   3'- caUGCGCUACgGGCU-CUUCGcCUACU- -5'
29405 5' -54.6 NC_006151.1 + 42252 0.71 0.728909
Target:  5'- --uCGCGGccCCCGGGGAGCGGggGGu -3'
miRNA:   3'- cauGCGCUacGGGCUCUUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 84387 0.71 0.728909
Target:  5'- -cGCGCGggGacgggCGGGGAGCGGGUGGg -3'
miRNA:   3'- caUGCGCuaCgg---GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 50152 0.71 0.688388
Target:  5'- -cGCGCGc-GCCCGAcGAGCGGAcGAg -3'
miRNA:   3'- caUGCGCuaCGGGCUcUUCGCCUaCU- -5'
29405 5' -54.6 NC_006151.1 + 8126 0.71 0.688388
Target:  5'- -aGCGCGGaccccGCCCGguggGGggGCGGGUGc -3'
miRNA:   3'- caUGCGCUa----CGGGC----UCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 115056 0.72 0.678114
Target:  5'- uGUACGC---GUCCGGGggGCGGcUGAg -3'
miRNA:   3'- -CAUGCGcuaCGGGCUCuuCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 111310 0.72 0.667801
Target:  5'- -aACGCGGcggccgcgUGCCCGGGcacGGGCGaGAUGAc -3'
miRNA:   3'- caUGCGCU--------ACGGGCUC---UUCGC-CUACU- -5'
29405 5' -54.6 NC_006151.1 + 114392 0.72 0.657458
Target:  5'- uGUACGUGGUGuucCCCGAGAAGUcGGUGc -3'
miRNA:   3'- -CAUGCGCUAC---GGGCUCUUCGcCUACu -5'
29405 5' -54.6 NC_006151.1 + 75408 0.72 0.636719
Target:  5'- cGUGCGCGG-GUCCGGGAGGCccGGcGUGGg -3'
miRNA:   3'- -CAUGCGCUaCGGGCUCUUCG--CC-UACU- -5'
29405 5' -54.6 NC_006151.1 + 44026 0.73 0.595261
Target:  5'- --cCGCGGggagccgGCCguCGAGAAGUGGAUGAg -3'
miRNA:   3'- cauGCGCUa------CGG--GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 122426 0.74 0.564431
Target:  5'- -gACGCcgccGAgGCCCGGGAGGCGGAg-- -3'
miRNA:   3'- caUGCG----CUaCGGGCUCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 30950 0.74 0.554242
Target:  5'- gGUAuCGCGGcgGCCCGGGAgagcgGGCGGggGAc -3'
miRNA:   3'- -CAU-GCGCUa-CGGGCUCU-----UCGCCuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.