miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 5' -53.5 NC_006151.1 + 4574 0.74 0.645667
Target:  5'- cGGCGgggucacgcugcCGGUGAUGAaggagccguggcCGUGGGGCGCGUg -3'
miRNA:   3'- cCCGC------------GCUACUACU------------GCAUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 130935 0.74 0.655959
Target:  5'- cGGGgGCGggGgcGGCGgGGGGuCGCGCg -3'
miRNA:   3'- -CCCgCGCuaCuaCUGCaUCCU-GUGCG- -5'
29406 5' -53.5 NC_006151.1 + 31729 0.74 0.655959
Target:  5'- gGGGCGUGGaGA-GGCGcccgcgccgGGGACGCGCc -3'
miRNA:   3'- -CCCGCGCUaCUaCUGCa--------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 141740 0.73 0.686684
Target:  5'- aGGGCG-GAgg--GGCGcGGGGCGCGCg -3'
miRNA:   3'- -CCCGCgCUacuaCUGCaUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 121412 0.73 0.686684
Target:  5'- cGGCGCGGgcGggGACGUcgcGGGGCuCGCg -3'
miRNA:   3'- cCCGCGCUa-CuaCUGCA---UCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 26351 0.73 0.696846
Target:  5'- gGGGCgGCGgcGGgccGCGUcGGGGCGCGCg -3'
miRNA:   3'- -CCCG-CGCuaCUac-UGCA-UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 127375 0.73 0.696846
Target:  5'- gGGGacCGCGggGGUGGCG-GGGGC-CGCg -3'
miRNA:   3'- -CCC--GCGCuaCUACUGCaUCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 118432 0.73 0.723983
Target:  5'- cGGGCGCGGaGGUGugcgcGCGgcucggccuggccgcGGACGCGCa -3'
miRNA:   3'- -CCCGCGCUaCUAC-----UGCau-------------CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 22183 0.73 0.726965
Target:  5'- cGGGCGCGuGUGGUaGACGUccgcGGGGC-CGa -3'
miRNA:   3'- -CCCGCGC-UACUA-CUGCA----UCCUGuGCg -5'
29406 5' -53.5 NC_006151.1 + 99995 0.73 0.726965
Target:  5'- uGGcGCGCGAgGAccUGACgGUGGcGCACGCg -3'
miRNA:   3'- -CC-CGCGCUaCU--ACUG-CAUCcUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 88805 0.72 0.736852
Target:  5'- cGGGCGCGAgcgcguccGGUgGGCGaGGGAgGCGUu -3'
miRNA:   3'- -CCCGCGCUa-------CUA-CUGCaUCCUgUGCG- -5'
29406 5' -53.5 NC_006151.1 + 27440 0.72 0.736852
Target:  5'- uGGGCGCGGcgGAcgcgGugGgucgGGGGCGgGCg -3'
miRNA:   3'- -CCCGCGCUa-CUa---CugCa---UCCUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 65699 0.72 0.746646
Target:  5'- cGGGCGCGG-GAUcAgGUAGGGggccuCGCGCg -3'
miRNA:   3'- -CCCGCGCUaCUAcUgCAUCCU-----GUGCG- -5'
29406 5' -53.5 NC_006151.1 + 110102 0.72 0.746646
Target:  5'- -cGCGCG-UGGUGGaGUcGGACACGCu -3'
miRNA:   3'- ccCGCGCuACUACUgCAuCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 98341 0.72 0.765919
Target:  5'- cGGGcCGCGAgacgcccGcgGGCGUGcgcgggcucuGGGCGCGCg -3'
miRNA:   3'- -CCC-GCGCUa------CuaCUGCAU----------CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 81751 0.72 0.765919
Target:  5'- cGGCGCGGagcUGGUccgcgGGCGccaccGGGACGCGCu -3'
miRNA:   3'- cCCGCGCU---ACUA-----CUGCa----UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 29472 0.72 0.765919
Target:  5'- cGGGCGCGccggGAgagGAa--AGGGCGCGCu -3'
miRNA:   3'- -CCCGCGCua--CUa--CUgcaUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 64239 0.72 0.765919
Target:  5'- aGGGcCGCGAcGgcGGCGcGGGcCACGCu -3'
miRNA:   3'- -CCC-GCGCUaCuaCUGCaUCCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 27085 0.72 0.775379
Target:  5'- aGGGCGCG------GCGcAGGGCGCGCg -3'
miRNA:   3'- -CCCGCGCuacuacUGCaUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 87796 0.71 0.78471
Target:  5'- uGGGUGgGA-GAggGugGgagAGGGCGCGCc -3'
miRNA:   3'- -CCCGCgCUaCUa-CugCa--UCCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.