miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 10435 0.65 0.572981
Target:  5'- gCCGAgGCCgGCGGggaGGGaggaggaggaggaCGCGGCGGCg -3'
miRNA:   3'- -GGCU-CGG-CGCCgagCCC-------------GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4344 0.65 0.572981
Target:  5'- nCGAaggcGgCGCGGacgCGGGCGCAGagggccuCGACg -3'
miRNA:   3'- gGCU----CgGCGCCga-GCCCGCGUC-------GCUG- -5'
29409 3' -64.1 NC_006151.1 + 61772 0.66 0.564381
Target:  5'- gCCGugguGCUGCGGCgCGaGGC-CGGcCGGCu -3'
miRNA:   3'- -GGCu---CGGCGCCGaGC-CCGcGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 66862 0.66 0.564381
Target:  5'- -aGGGCCGgGGCggcgcgaaGGGCGCGccCGGCc -3'
miRNA:   3'- ggCUCGGCgCCGag------CCCGCGUc-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 111658 0.66 0.564381
Target:  5'- gCCGuGaUCGCGGCcagggGGGCGuCGGCGGg -3'
miRNA:   3'- -GGCuC-GGCGCCGag---CCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 2628 0.66 0.564381
Target:  5'- uCCgGGGCC-CGGCgCGGGUGCucaccguguAGCGcACg -3'
miRNA:   3'- -GG-CUCGGcGCCGaGCCCGCG---------UCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 111987 0.66 0.564381
Target:  5'- gUGAGCggUGCGGCUacgacgucgaCGcGGCGgCGGCGAUu -3'
miRNA:   3'- gGCUCG--GCGCCGA----------GC-CCGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 123946 0.66 0.564381
Target:  5'- gCCGAcGCC-CGGgaCGGGCGCcacccccaaCGACg -3'
miRNA:   3'- -GGCU-CGGcGCCgaGCCCGCGuc-------GCUG- -5'
29409 3' -64.1 NC_006151.1 + 19497 0.66 0.564381
Target:  5'- cCCGcuCCGgGGcCUCGGGgaCGCAggcGCGGCc -3'
miRNA:   3'- -GGCucGGCgCC-GAGCCC--GCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 73922 0.66 0.564381
Target:  5'- aUGAGCa--GGC-CGuGGUGCAGCGAg -3'
miRNA:   3'- gGCUCGgcgCCGaGC-CCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 92108 0.66 0.564381
Target:  5'- cUCGGaCCGCGGCaucuUCGGGaacggccgcauCGCGcGCGGCg -3'
miRNA:   3'- -GGCUcGGCGCCG----AGCCC-----------GCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 98945 0.66 0.564381
Target:  5'- gCCGAG--GCGGCgCGGGCcGUggacgaGGCGGCg -3'
miRNA:   3'- -GGCUCggCGCCGaGCCCG-CG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 720 0.66 0.564381
Target:  5'- aCCGGGgguCCGCGGg-CGGGgGCuuccgcuccGCGGCg -3'
miRNA:   3'- -GGCUC---GGCGCCgaGCCCgCGu--------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 120347 0.66 0.564381
Target:  5'- cCCGcguGGCCG-GGCUcgCGGGCGCcuaccAGCGcCc -3'
miRNA:   3'- -GGC---UCGGCgCCGA--GCCCGCG-----UCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 127795 0.66 0.564381
Target:  5'- cCCGccGCCGCGcGCggGGGCGCGagguccuuGCGGu -3'
miRNA:   3'- -GGCu-CGGCGC-CGagCCCGCGU--------CGCUg -5'
29409 3' -64.1 NC_006151.1 + 35476 0.66 0.562475
Target:  5'- gCCGgcGGCCGCcaucuugGGC-CGGGCaugcaaaGCAGaCGGCa -3'
miRNA:   3'- -GGC--UCGGCG-------CCGaGCCCG-------CGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 106790 0.66 0.554866
Target:  5'- aCCuGGCCGCGGCggcggugcucgUCGGGgcccCGCuGGUGAUc -3'
miRNA:   3'- -GGcUCGGCGCCG-----------AGCCC----GCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 126081 0.66 0.554866
Target:  5'- -gGGGCCGUGauCUCGGcCGuCGGCGGCa -3'
miRNA:   3'- ggCUCGGCGCc-GAGCCcGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103993 0.66 0.554866
Target:  5'- gCG-GCCGUGGCggcCGuggaGGCGCGccgcGCGGCg -3'
miRNA:   3'- gGCuCGGCGCCGa--GC----CCGCGU----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 33934 0.66 0.554866
Target:  5'- aUCGAGgcCCGCgcgccccgggGGCUCGGG-GCGG-GACg -3'
miRNA:   3'- -GGCUC--GGCG----------CCGAGCCCgCGUCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.