Results 21 - 40 of 399 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 20099 | 0.76 | 0.12936 |
Target: 5'- uUGGGCUGgGGgaCGGGCGCcccGGCGACg -3' miRNA: 3'- gGCUCGGCgCCgaGCCCGCG---UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 141488 | 0.76 | 0.13388 |
Target: 5'- uCCGAGagccuCCGCGGCgaCGGGCGUcuccacgggggccgaGGCGACg -3' miRNA: 3'- -GGCUC-----GGCGCCGa-GCCCGCG---------------UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 77093 | 0.76 | 0.132574 |
Target: 5'- gCGAGCUGaaGCgCGGGCGCGGCGGg -3' miRNA: 3'- gGCUCGGCgcCGaGCCCGCGUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 64532 | 0.76 | 0.132574 |
Target: 5'- ---cGCCGCGGCcgcgUCGGGgGCGGCGAg -3' miRNA: 3'- ggcuCGGCGCCG----AGCCCgCGUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 20179 | 0.76 | 0.127466 |
Target: 5'- cCCGGGUCGCGGC-CGGuagaugcgauuccgcGCGCAGCGcCg -3' miRNA: 3'- -GGCUCGGCGCCGaGCC---------------CGCGUCGCuG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 103762 | 0.75 | 0.164966 |
Target: 5'- gCGcGCCGCGGCgcugcgcgagUCGGaGCGCuGGCGGCg -3' miRNA: 3'- gGCuCGGCGCCG----------AGCC-CGCG-UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 11692 | 0.75 | 0.161042 |
Target: 5'- aCgGGGCCGCGGgaCGGcGCGU-GCGGCg -3' miRNA: 3'- -GgCUCGGCGCCgaGCC-CGCGuCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 10194 | 0.75 | 0.161042 |
Target: 5'- gCCG-GUCGCGGCgCGGGCGgCGGCuGCa -3' miRNA: 3'- -GGCuCGGCGCCGaGCCCGC-GUCGcUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 102598 | 0.75 | 0.161042 |
Target: 5'- gCGAGUCGCagcgGGCgcucgagCGGGCGC-GCGACg -3' miRNA: 3'- gGCUCGGCG----CCGa------GCCCGCGuCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 112037 | 0.75 | 0.146177 |
Target: 5'- -gGAGCUGgGGCcggCGGGCggGCGGCGGCg -3' miRNA: 3'- ggCUCGGCgCCGa--GCCCG--CGUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 68272 | 0.75 | 0.146177 |
Target: 5'- aCG-GUCGCGGCgcCGGGCGCcacGGCGGCc -3' miRNA: 3'- gGCuCGGCGCCGa-GCCCGCG---UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 5085 | 0.75 | 0.168975 |
Target: 5'- gCgGGGCCGCGGC--GGGCGcCGGCGGa -3' miRNA: 3'- -GgCUCGGCGCCGagCCCGC-GUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 15431 | 0.75 | 0.157203 |
Target: 5'- uCCGAGuuuagcuuCCGCGGCUCGGuGUGCgaGGaCGACg -3' miRNA: 3'- -GGCUC--------GGCGCCGAGCC-CGCG--UC-GCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 31757 | 0.75 | 0.168975 |
Target: 5'- aCGcGCCuGCGGCggCGGGCGCgcgccgGGCGGCu -3' miRNA: 3'- gGCuCGG-CGCCGa-GCCCGCG------UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 69582 | 0.74 | 0.185896 |
Target: 5'- gCCGcGCCGCGacgaGCUCGGccGCGCGGCGcACc -3' miRNA: 3'- -GGCuCGGCGC----CGAGCC--CGCGUCGC-UG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 89947 | 0.74 | 0.194905 |
Target: 5'- uCCGcGGgCGCGGCcaggaacCGGGCGCGGCuGGCg -3' miRNA: 3'- -GGC-UCgGCGCCGa------GCCCGCGUCG-CUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 131062 | 0.74 | 0.18153 |
Target: 5'- gCCGucuccauGCCGCGGa--GGGCGC-GCGACa -3' miRNA: 3'- -GGCu------CGGCGCCgagCCCGCGuCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 119052 | 0.74 | 0.187668 |
Target: 5'- gCGGcGCCGCGGCcgccuccgCGGGCGCGcccgucucgcaggccGCGGCg -3' miRNA: 3'- gGCU-CGGCGCCGa-------GCCCGCGU---------------CGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 21472 | 0.74 | 0.177256 |
Target: 5'- cCCGcGUCGcCGGCUCGGGCa-GGCGGCc -3' miRNA: 3'- -GGCuCGGC-GCCGAGCCCGcgUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 21309 | 0.74 | 0.173071 |
Target: 5'- aCCGAGCgGUGGCgCGagacgcccGGCGCGGCGGg -3' miRNA: 3'- -GGCUCGgCGCCGaGC--------CCGCGUCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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