miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 119052 0.74 0.187668
Target:  5'- gCGGcGCCGCGGCcgccuccgCGGGCGCGcccgucucgcaggccGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCCGa-------GCCCGCGU---------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 3103 0.74 0.188559
Target:  5'- gCCGAgaggccGCCGCGGCgcgggucccaggcCGGGCGCGG-GGCg -3'
miRNA:   3'- -GGCU------CGGCGCCGa------------GCCCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 84407 0.74 0.190353
Target:  5'- gCGGGUgggCGCGGUgauaaggCGGcGCGCGGCGGCg -3'
miRNA:   3'- gGCUCG---GCGCCGa------GCC-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 116227 0.74 0.194905
Target:  5'- gCGAGCCGCGccacggccgagaGCUCGaGGUGCGGCa-- -3'
miRNA:   3'- gGCUCGGCGC------------CGAGC-CCGCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 89947 0.74 0.194905
Target:  5'- uCCGcGGgCGCGGCcaggaacCGGGCGCGGCuGGCg -3'
miRNA:   3'- -GGC-UCgGCGCCGa------GCCCGCGUCG-CUG- -5'
29409 3' -64.1 NC_006151.1 + 81267 0.73 0.199551
Target:  5'- gCGAGCagcgccucgGCGGggauCUCGGGCGCGGCGcGCg -3'
miRNA:   3'- gGCUCGg--------CGCC----GAGCCCGCGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 129280 0.73 0.203814
Target:  5'- aCGAagCGCGGCgcguuccUCGGGCGCGGCGGa -3'
miRNA:   3'- gGCUcgGCGCCG-------AGCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 64620 0.73 0.209133
Target:  5'- gCCGcGCCGcCGGCcgCgGGGCGCGGCGcCc -3'
miRNA:   3'- -GGCuCGGC-GCCGa-G-CCCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 3430 0.73 0.214071
Target:  5'- gCCGGGaCGCGGCggaagccgccgUCGGGCGCGGgGuGCu -3'
miRNA:   3'- -GGCUCgGCGCCG-----------AGCCCGCGUCgC-UG- -5'
29409 3' -64.1 NC_006151.1 + 84357 0.73 0.216074
Target:  5'- gCCGGcCCGCGGCggugaucgcgaucgCGGcGCGCGGgGACg -3'
miRNA:   3'- -GGCUcGGCGCCGa-------------GCC-CGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 60086 0.73 0.219109
Target:  5'- cCCGcgcgccGCCGCGaacGC-CGGGCgGCAGCGGCg -3'
miRNA:   3'- -GGCu-----CGGCGC---CGaGCCCG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 123887 0.73 0.219109
Target:  5'- gCGcucGCCGCGGCcccgccgUGcGGCGCGGCGGCc -3'
miRNA:   3'- gGCu--CGGCGCCGa------GC-CCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 39330 0.73 0.219109
Target:  5'- aCCucuGCuCGCGGCUCGgcgcGGCGCGGCGcCg -3'
miRNA:   3'- -GGcu-CG-GCGCCGAGC----CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 130725 0.73 0.224248
Target:  5'- -gGGGCCcgcGCGGC-CGcGGCGCAGCGcCa -3'
miRNA:   3'- ggCUCGG---CGCCGaGC-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 27358 0.73 0.224248
Target:  5'- gUGGGCCGgGGCcCGGGCGgGuCGACg -3'
miRNA:   3'- gGCUCGGCgCCGaGCCCGCgUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 40067 0.73 0.224248
Target:  5'- aCCGGcCCGCGGgggcCUCGGGCGCcGgGGCc -3'
miRNA:   3'- -GGCUcGGCGCC----GAGCCCGCGuCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 130321 0.73 0.224248
Target:  5'- gCGcGCCGCGcGCUCGGggagcucgcGCGCcGCGGCg -3'
miRNA:   3'- gGCuCGGCGC-CGAGCC---------CGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 29584 0.73 0.229489
Target:  5'- aCGGaucGCgGCGGCUgCGGcCGCGGCGGCg -3'
miRNA:   3'- gGCU---CGgCGCCGA-GCCcGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 105546 0.73 0.229489
Target:  5'- cCCGAGCUGCGGCacgacgcccugCGcGCGCuGGCGGCc -3'
miRNA:   3'- -GGCUCGGCGCCGa----------GCcCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 90624 0.73 0.229489
Target:  5'- cCCGAG--GCGGCccgCGGGCGCuuGGCGAUg -3'
miRNA:   3'- -GGCUCggCGCCGa--GCCCGCG--UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.