miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 139965 0.73 0.641452
Target:  5'- cGAGCAGUUCACCccgGACGggc-GGCGCg -3'
miRNA:   3'- cUUCGUCGAGUGG---CUGUaguaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 58325 0.73 0.651966
Target:  5'- -cGGCGGCgCGCCGGCcuccgCGUaGGCGCg -3'
miRNA:   3'- cuUCGUCGaGUGGCUGua---GUA-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 81414 0.73 0.651966
Target:  5'- aGGGUGGCgucccCGCCGAgGUCGcGGCGCa -3'
miRNA:   3'- cUUCGUCGa----GUGGCUgUAGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 94052 0.72 0.671889
Target:  5'- --cGCGGCgUCGCCGcggaacaGCAUCAgcuggaUGGCGCu -3'
miRNA:   3'- cuuCGUCG-AGUGGC-------UGUAGU------ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 18700 0.72 0.672935
Target:  5'- cGGGCGGC--GCCGGCGUCGUGaCGCc -3'
miRNA:   3'- cUUCGUCGagUGGCUGUAGUACcGCG- -5'
29410 3' -53.7 NC_006151.1 + 118894 0.72 0.679202
Target:  5'- cGAcGCGGC-CGCCGGCGgccucgagcgccgCAUGGCGUc -3'
miRNA:   3'- -CUuCGUCGaGUGGCUGUa------------GUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 57174 0.72 0.693763
Target:  5'- cGgcGCGGCcCAgaagUCGGgGUCGUGGCGCg -3'
miRNA:   3'- -CuuCGUCGaGU----GGCUgUAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 85748 0.71 0.724573
Target:  5'- --cGCAGCUCuuccccggGCUGGCcgCGcUGGCGCu -3'
miRNA:   3'- cuuCGUCGAG--------UGGCUGuaGU-ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 95106 0.71 0.734687
Target:  5'- aGAGCAGCUCcUCGGCG--AUGGCGg -3'
miRNA:   3'- cUUCGUCGAGuGGCUGUagUACCGCg -5'
29410 3' -53.7 NC_006151.1 + 74295 0.71 0.734687
Target:  5'- -uGGaCAGCaccgacCACuCGGCGUCGUGGUGCg -3'
miRNA:   3'- cuUC-GUCGa-----GUG-GCUGUAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 53640 0.71 0.743711
Target:  5'- --uGCAGCUCGCgcaccguCGGCGggcUCGUGGgGCa -3'
miRNA:   3'- cuuCGUCGAGUG-------GCUGU---AGUACCgCG- -5'
29410 3' -53.7 NC_006151.1 + 51986 0.71 0.744708
Target:  5'- cGAGCAGCUCcgcgguGCCGGCGUgCAgcuuGCGCc -3'
miRNA:   3'- cUUCGUCGAG------UGGCUGUA-GUac--CGCG- -5'
29410 3' -53.7 NC_006151.1 + 60826 0.71 0.754625
Target:  5'- cGAGCAGCUCcacgaGCUGcGCGuugaUCGUGGCGUc -3'
miRNA:   3'- cUUCGUCGAG-----UGGC-UGU----AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 27149 0.71 0.75856
Target:  5'- aGAGGCGGUUCACguCGGCcccgaggcgccgcguGUCggGGCGCc -3'
miRNA:   3'- -CUUCGUCGAGUG--GCUG---------------UAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 118097 0.71 0.75856
Target:  5'- cGAGGC-GCUgCGCCG-CGaccugcuggcgcugcUCGUGGCGCg -3'
miRNA:   3'- -CUUCGuCGA-GUGGCuGU---------------AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 116083 0.71 0.763453
Target:  5'- -uGGUAGC-CGCCGcCGUCGuccucgucggcgaUGGCGCg -3'
miRNA:   3'- cuUCGUCGaGUGGCuGUAGU-------------ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 667 0.71 0.764427
Target:  5'- cGggGCGGgCUcCGCgGAUcgCAUcGGCGCg -3'
miRNA:   3'- -CuuCGUC-GA-GUGgCUGuaGUA-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 100428 0.71 0.764427
Target:  5'- gGggGC-GCU-GCgCGGCGUgAUGGCGCa -3'
miRNA:   3'- -CuuCGuCGAgUG-GCUGUAgUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 102481 0.71 0.764427
Target:  5'- --cGCAGCUC-UCGGCGugcuUCAUGGaCGCc -3'
miRNA:   3'- cuuCGUCGAGuGGCUGU----AGUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 86568 0.71 0.764427
Target:  5'- -cGGCAGCUC-UCGGCG-CG-GGCGCg -3'
miRNA:   3'- cuUCGUCGAGuGGCUGUaGUaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.