miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 141401 0.69 0.829024
Target:  5'- -cAGCGGCguguCCGGCgAUCGgugcgGGCGCg -3'
miRNA:   3'- cuUCGUCGagu-GGCUG-UAGUa----CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 139965 0.73 0.641452
Target:  5'- cGAGCAGUUCACCccgGACGggc-GGCGCg -3'
miRNA:   3'- cUUCGUCGAGUGG---CUGUaguaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 139603 0.68 0.884418
Target:  5'- cGAGCGGCg-GCC--CGUCcgGGCGCg -3'
miRNA:   3'- cUUCGUCGagUGGcuGUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 139074 0.68 0.884418
Target:  5'- cGAGCucgGGCUcCGCCugggGGCGcgCAUGGCGCu -3'
miRNA:   3'- cUUCG---UCGA-GUGG----CUGUa-GUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 138914 0.7 0.820292
Target:  5'- cGAGCGuGCUCGCCGcCAcggUCAUcGGCuGCa -3'
miRNA:   3'- cUUCGU-CGAGUGGCuGU---AGUA-CCG-CG- -5'
29410 3' -53.7 NC_006151.1 + 138348 0.67 0.917052
Target:  5'- --cGCAGCcCGCCGGCccgcaccuUCGUGGCc- -3'
miRNA:   3'- cuuCGUCGaGUGGCUGu-------AGUACCGcg -5'
29410 3' -53.7 NC_006151.1 + 137740 0.67 0.904737
Target:  5'- -cGGUGGCcggCGCCGACA-CGguccgcggccUGGCGCg -3'
miRNA:   3'- cuUCGUCGa--GUGGCUGUaGU----------ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 137072 0.67 0.922833
Target:  5'- uGGAGCuGGCgCACCGGCGccaggccuUCGcGGUGCu -3'
miRNA:   3'- -CUUCG-UCGaGUGGCUGU--------AGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 135401 0.69 0.837566
Target:  5'- cAGGCcGUcgUCGCCGgagGCcUCGUGGCGCg -3'
miRNA:   3'- cUUCGuCG--AGUGGC---UGuAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 134217 0.67 0.911019
Target:  5'- gGggGCGGUcgCACCaccaacGGgAUCGUGGaCGCg -3'
miRNA:   3'- -CuuCGUCGa-GUGG------CUgUAGUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 133661 0.66 0.956268
Target:  5'- aGAGGC-GCU-GCCGGCG-CGgcGGCGCg -3'
miRNA:   3'- -CUUCGuCGAgUGGCUGUaGUa-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 133545 0.66 0.93866
Target:  5'- -uAGUAGC-CAUCGuCGUCGUaggacGGCGCc -3'
miRNA:   3'- cuUCGUCGaGUGGCuGUAGUA-----CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 133478 0.77 0.421121
Target:  5'- cGAGGCGGC-CGCgGGCGUCAccuUGGCGg -3'
miRNA:   3'- -CUUCGUCGaGUGgCUGUAGU---ACCGCg -5'
29410 3' -53.7 NC_006151.1 + 132069 0.66 0.943432
Target:  5'- -cGGCGGCUCcUCGACcagGUC--GGCGCc -3'
miRNA:   3'- cuUCGUCGAGuGGCUG---UAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 131850 0.68 0.891433
Target:  5'- cGggGCGGCcgagacgcgCGCCGGCGgcgUcgGGuCGCa -3'
miRNA:   3'- -CuuCGUCGa--------GUGGCUGUa--GuaCC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 131444 0.68 0.891433
Target:  5'- cGGGCGGCggGCgGAaGUCcgGGCGCc -3'
miRNA:   3'- cUUCGUCGagUGgCUgUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 130896 0.7 0.79305
Target:  5'- gGAGGCGGCggccgUCGCCGuCGUCgGUGGC-Cg -3'
miRNA:   3'- -CUUCGUCG-----AGUGGCuGUAG-UACCGcG- -5'
29410 3' -53.7 NC_006151.1 + 130497 0.7 0.774105
Target:  5'- --cGCGGCgccacaCGCCGcGCGUCucgGGCGCg -3'
miRNA:   3'- cuuCGUCGa-----GUGGC-UGUAGua-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 130445 0.66 0.93866
Target:  5'- --uGCAGCggCGCCaGAaa-CAUGGCGUg -3'
miRNA:   3'- cuuCGUCGa-GUGG-CUguaGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 130335 0.67 0.922833
Target:  5'- cGGGgAGCUCGCgcgccgCGGCGUCGUGGUu- -3'
miRNA:   3'- cUUCgUCGAGUG------GCUGUAGUACCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.