miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 58609 0.7 0.45618
Target:  5'- uGGCCGgGUCCGUCUcgaagcGCAGCggCUCGUa -3'
miRNA:   3'- gCCGGCgUAGGUAGA------CGUCG--GGGCAg -5'
29411 3' -60.7 NC_006151.1 + 11992 0.7 0.465251
Target:  5'- cCGcGCCGCu---GUCUGUGGCgCCCGUCg -3'
miRNA:   3'- -GC-CGGCGuaggUAGACGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 119060 0.7 0.465251
Target:  5'- gCGGCCGCcUCCGcggGC-GCgCCCGUCu -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGuCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 38152 0.7 0.465251
Target:  5'- aGGCCGCGgac-UCUGUcGCCCuCGUCg -3'
miRNA:   3'- gCCGGCGUagguAGACGuCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 82067 0.69 0.473494
Target:  5'- gCGGCCacgucgcGCAU-CGUCUGgugcaUGGCCCCGUCg -3'
miRNA:   3'- -GCCGG-------CGUAgGUAGAC-----GUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58764 0.69 0.474415
Target:  5'- gCGGCCGCcgagcCCGUCcacgGC-GCCgCCGUCa -3'
miRNA:   3'- -GCCGGCGua---GGUAGa---CGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 77181 0.69 0.483668
Target:  5'- -cGCCGCGUCCAcgUCcGCcGCCgCGUCc -3'
miRNA:   3'- gcCGGCGUAGGU--AGaCGuCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 39846 0.69 0.493007
Target:  5'- gCGGCCGCcggggccucgCCGagcUCcGCGGCCCCGa- -3'
miRNA:   3'- -GCCGGCGua--------GGU---AGaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 63796 0.69 0.493007
Target:  5'- uCGGCCGUcgCCAgcgcCUcGCcgGGCCCCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUa---GA-CG--UCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 62383 0.69 0.493007
Target:  5'- gGGaCGCGcgCCGUCcugGCGGUCCUGUCg -3'
miRNA:   3'- gCCgGCGUa-GGUAGa--CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109248 0.69 0.493007
Target:  5'- -cGCCGCGgucUCCG-CUgGCGGCCCCGa- -3'
miRNA:   3'- gcCGGCGU---AGGUaGA-CGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 4939 0.69 0.502428
Target:  5'- gCGGCC-CGUCgGUCgGCGGgggCCCGUCg -3'
miRNA:   3'- -GCCGGcGUAGgUAGaCGUCg--GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 32039 0.69 0.502428
Target:  5'- --uCCGCGUCCGcagccgccUCUGCAGCCgCCGcCc -3'
miRNA:   3'- gccGGCGUAGGU--------AGACGUCGG-GGCaG- -5'
29411 3' -60.7 NC_006151.1 + 104307 0.69 0.506218
Target:  5'- gCGGCUGaCGUggcucgacgacuacgCCGUC-GCGGCgCCCGUCa -3'
miRNA:   3'- -GCCGGC-GUA---------------GGUAGaCGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 6139 0.69 0.511926
Target:  5'- cCGGCCGCggCCG-CgaggacgGCGGCCUCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUaGa------CGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 57526 0.69 0.511926
Target:  5'- gCGGCCGCcUCCGgc-GCGGCCgcgggcaCGUCg -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGUCGGg------GCAG- -5'
29411 3' -60.7 NC_006151.1 + 68017 0.69 0.521498
Target:  5'- uCGGCgGCGUCCAggUCcagGCGGCCCg--- -3'
miRNA:   3'- -GCCGgCGUAGGU--AGa--CGUCGGGgcag -5'
29411 3' -60.7 NC_006151.1 + 57433 0.69 0.521498
Target:  5'- aGcGUCaCGUCCGUCgcgGCGGCCCCcgcGUCg -3'
miRNA:   3'- gC-CGGcGUAGGUAGa--CGUCGGGG---CAG- -5'
29411 3' -60.7 NC_006151.1 + 36745 0.68 0.531139
Target:  5'- uCGGCCGCuuggcgCCc---GgAGCCCCGUCu -3'
miRNA:   3'- -GCCGGCGua----GGuagaCgUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 93059 0.68 0.531139
Target:  5'- gGGCCaC-UCCGUCcGCgGGCUCCGUCu -3'
miRNA:   3'- gCCGGcGuAGGUAGaCG-UCGGGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.