miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 140049 0.66 0.690005
Target:  5'- gCGGCCGCAcgCCAcCgagGCGGCgCgCGUg -3'
miRNA:   3'- -GCCGGCGUa-GGUaGa--CGUCGgG-GCAg -5'
29411 3' -60.7 NC_006151.1 + 139463 0.66 0.689016
Target:  5'- -cGCCGCccgCCAcCUGCacaccgcGGCCCCGcUCg -3'
miRNA:   3'- gcCGGCGua-GGUaGACG-------UCGGGGC-AG- -5'
29411 3' -60.7 NC_006151.1 + 135873 0.74 0.253195
Target:  5'- uGGCCaGCGUCCGcgUGCGGCCCguguuCGUCg -3'
miRNA:   3'- gCCGG-CGUAGGUagACGUCGGG-----GCAG- -5'
29411 3' -60.7 NC_006151.1 + 135034 0.67 0.63915
Target:  5'- gGGCCGCgucGUCC-UCgggGCGGUCCCccuccucGUCu -3'
miRNA:   3'- gCCGGCG---UAGGuAGa--CGUCGGGG-------CAG- -5'
29411 3' -60.7 NC_006151.1 + 133261 0.66 0.690005
Target:  5'- aCGGCCugucgcugaagGCGagCCGgcgGCGGCCCaCGUCg -3'
miRNA:   3'- -GCCGG-----------CGUa-GGUagaCGUCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 133042 0.66 0.699871
Target:  5'- uGGCCGCcUCgAUCaggucCAGCCCC-UCg -3'
miRNA:   3'- gCCGGCGuAGgUAGac---GUCGGGGcAG- -5'
29411 3' -60.7 NC_006151.1 + 132868 0.67 0.590138
Target:  5'- gGGCCGCGcCCccCaGCagGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGUaGGuaGaCG--UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 130903 0.68 0.550608
Target:  5'- gCGGCCGUcgCCGUCgucggugGCcgGGCCCgCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUAGa------CG--UCGGG-GCag -5'
29411 3' -60.7 NC_006151.1 + 128422 0.66 0.670145
Target:  5'- aGGCCGCAcacgccgcucuUCCAgggcgUCU-CGGCCCaCGUg -3'
miRNA:   3'- gCCGGCGU-----------AGGU-----AGAcGUCGGG-GCAg -5'
29411 3' -60.7 NC_006151.1 + 127565 0.68 0.550608
Target:  5'- uGGCCGCcgCCGgcgccUCguucGCcGuCCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGU-----AGa---CGuC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 124101 0.67 0.630132
Target:  5'- gGGaCCGCuUCUacGUCUGCccGCCgCCGUCc -3'
miRNA:   3'- gCC-GGCGuAGG--UAGACGu-CGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 123824 0.66 0.660166
Target:  5'- uGGCCuGC-UCCAcaccacgCUGCAGCUgcgcggggcgCCGUCg -3'
miRNA:   3'- gCCGG-CGuAGGUa------GACGUCGG----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 120853 0.66 0.670145
Target:  5'- uGGCCacguacaCGUCCAgccacCUGCuccGCUCCGUCa -3'
miRNA:   3'- gCCGGc------GUAGGUa----GACGu--CGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 120751 0.67 0.586157
Target:  5'- cCGGCCGCGUCauggccugggUGCGGCgCCCGc- -3'
miRNA:   3'- -GCCGGCGUAGguag------ACGUCG-GGGCag -5'
29411 3' -60.7 NC_006151.1 + 119060 0.7 0.465251
Target:  5'- gCGGCCGCcUCCGcggGC-GCgCCCGUCu -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGuCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 118908 0.66 0.694944
Target:  5'- gCGGCCucgagcgccgcaugGCGUCCGUCaugagcgccgacGCGGCgCUGUCg -3'
miRNA:   3'- -GCCGG--------------CGUAGGUAGa-----------CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 117088 0.68 0.540844
Target:  5'- uGGUCGCGUCCAcgc-CGGCCUCGUg -3'
miRNA:   3'- gCCGGCGUAGGUagacGUCGGGGCAg -5'
29411 3' -60.7 NC_006151.1 + 115227 0.66 0.690005
Target:  5'- uGGCCGCugccgCCGaga-CGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGua---GGUagacGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 110992 1.09 0.000882
Target:  5'- uCGGCCGCAUCCAUCUGCAGCCCCGUCg -3'
miRNA:   3'- -GCCGGCGUAGGUAGACGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109757 0.66 0.660166
Target:  5'- uGGCCGCcgCCGUUggaGGCgCCCG-Ca -3'
miRNA:   3'- gCCGGCGuaGGUAGacgUCG-GGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.