miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 5' -58.1 NC_006151.1 + 8276 0.7 0.564725
Target:  5'- --uCCGGGGgaaAGAGUGUCCccgcGCGGGCGc -3'
miRNA:   3'- cucGGCCUCg--UCUUACAGG----UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 102121 0.7 0.564725
Target:  5'- cGGGCCGGAGCc---UGuUCCcCGGGCGc -3'
miRNA:   3'- -CUCGGCCUCGucuuAC-AGGuGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 1979 0.7 0.574811
Target:  5'- gGGGCCGGAGaguCAGAGcagaGUCCGgcCGGGCc -3'
miRNA:   3'- -CUCGGCCUC---GUCUUa---CAGGU--GCCCGu -5'
29411 5' -58.1 NC_006151.1 + 120035 0.7 0.584938
Target:  5'- uGAGCCaGuGCcacGGcGUGcUCCACGGGCAg -3'
miRNA:   3'- -CUCGGcCuCG---UCuUAC-AGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 10053 0.69 0.595099
Target:  5'- gGAGCgGGAGCGGcucccgaGUCCgggaaggaaagGCGGGCGg -3'
miRNA:   3'- -CUCGgCCUCGUCuua----CAGG-----------UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 18306 0.69 0.595099
Target:  5'- aAGCCGGAGCGGGGcGccUCCucgGGGCGc -3'
miRNA:   3'- cUCGGCCUCGUCUUaC--AGGug-CCCGU- -5'
29411 5' -58.1 NC_006151.1 + 3537 0.69 0.605287
Target:  5'- -cGCgGGAGCGGg--GUCCggaGCGGGCc -3'
miRNA:   3'- cuCGgCCUCGUCuuaCAGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 90763 0.69 0.615495
Target:  5'- cGGGCaCGGuGGCGGg--GUCgGCGGGCGc -3'
miRNA:   3'- -CUCG-GCC-UCGUCuuaCAGgUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 23878 0.69 0.615495
Target:  5'- uGGCgGGGGC-GAGcggGUUCACGGGCu -3'
miRNA:   3'- cUCGgCCUCGuCUUa--CAGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 133384 0.69 0.615495
Target:  5'- cGGCCGGGGCGGcggccgGggCCgaGCGGGCGg -3'
miRNA:   3'- cUCGGCCUCGUCuua---Ca-GG--UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 4006 0.69 0.625716
Target:  5'- uGGCCGGGGCgaAGAggG-CCGCGGcGUAg -3'
miRNA:   3'- cUCGGCCUCG--UCUuaCaGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 49032 0.69 0.635941
Target:  5'- cGGGCCGGGcCAGGc---CCACGGGCu -3'
miRNA:   3'- -CUCGGCCUcGUCUuacaGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 91059 0.69 0.635941
Target:  5'- -cGCUGGAGgAGAcgGagaagucgaggCCGCGGGCGa -3'
miRNA:   3'- cuCGGCCUCgUCUuaCa----------GGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 27011 0.69 0.635941
Target:  5'- aGAGCUGGAGCAGGGccUG-CCAgcaggGGGCc -3'
miRNA:   3'- -CUCGGCCUCGUCUU--ACaGGUg----CCCGu -5'
29411 5' -58.1 NC_006151.1 + 93653 0.69 0.645142
Target:  5'- uGGCCGGcagguccAGCAGGAggcUGUCgCGCgGGGCGc -3'
miRNA:   3'- cUCGGCC-------UCGUCUU---ACAG-GUG-CCCGU- -5'
29411 5' -58.1 NC_006151.1 + 30738 0.69 0.646164
Target:  5'- -cGCgGGccCGGAGUG-CCGCGGGCGg -3'
miRNA:   3'- cuCGgCCucGUCUUACaGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 85301 0.69 0.646164
Target:  5'- -uGCCGcgcGAGCAGc---UCCACGGGCGc -3'
miRNA:   3'- cuCGGC---CUCGUCuuacAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 27418 0.69 0.646164
Target:  5'- cAGUCGGccCAGAcccgGUCCAUGGGCGc -3'
miRNA:   3'- cUCGGCCucGUCUua--CAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 48670 0.69 0.646164
Target:  5'- -cGCCGGGGCAGGGg--CCG-GGGCc -3'
miRNA:   3'- cuCGGCCUCGUCUUacaGGUgCCCGu -5'
29411 5' -58.1 NC_006151.1 + 142154 0.68 0.656375
Target:  5'- -cGCCGGcGCAGGggGcucguccaccUCCAUGGGCu -3'
miRNA:   3'- cuCGGCCuCGUCUuaC----------AGGUGCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.