miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 3' -61.5 NC_006151.1 + 7662 0.72 0.320452
Target:  5'- uCGGCGcGC-GCUCCGAgGGcGCCCcaGCCGg -3'
miRNA:   3'- -GCCGC-UGaCGAGGUUgCC-CGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 75137 0.72 0.320452
Target:  5'- cCGGCGGCgcgGC-CCAgcGCGGGCgCACgGg -3'
miRNA:   3'- -GCCGCUGa--CGaGGU--UGCCCGgGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 106572 0.72 0.334741
Target:  5'- -cGCGGCUGCUCuCGGCGcuguGGUCCGCCc -3'
miRNA:   3'- gcCGCUGACGAG-GUUGC----CCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 128124 0.72 0.342059
Target:  5'- gCGcGCGAagcGCUCCgu-GGGCCCGCCGu -3'
miRNA:   3'- -GC-CGCUga-CGAGGuugCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 38773 0.72 0.349492
Target:  5'- aGGaCGACcgGCUCCGGCgcccgcucGGGCCCAugcCCGa -3'
miRNA:   3'- gCC-GCUGa-CGAGGUUG--------CCCGGGU---GGC- -5'
29412 3' -61.5 NC_006151.1 + 68441 0.72 0.357039
Target:  5'- gCGGCGGCacaggcGCUCgAGCacgGGGUCCACCa -3'
miRNA:   3'- -GCCGCUGa-----CGAGgUUG---CCCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 9046 0.71 0.364699
Target:  5'- gGGCGccccGCgUGCUCCGGgGGcGCCgGCCGg -3'
miRNA:   3'- gCCGC----UG-ACGAGGUUgCC-CGGgUGGC- -5'
29412 3' -61.5 NC_006151.1 + 104267 0.71 0.364699
Target:  5'- aCGcCGGC-GCggCGGCGGGCCCGCCGc -3'
miRNA:   3'- -GCcGCUGaCGagGUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 17946 0.71 0.364699
Target:  5'- gCGGCGGC-GuCUCCGGCGcccGCCUGCCGg -3'
miRNA:   3'- -GCCGCUGaC-GAGGUUGCc--CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 40145 0.71 0.372473
Target:  5'- gCGGCGACggccgGCcCCGcggcccgcuCGGGCCCAUCa -3'
miRNA:   3'- -GCCGCUGa----CGaGGUu--------GCCCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 5657 0.71 0.372473
Target:  5'- cCGGCGGCgggggagGCUggggaAGCGGGCCCccGCCGu -3'
miRNA:   3'- -GCCGCUGa------CGAgg---UUGCCCGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 74563 0.71 0.372473
Target:  5'- gGGCuGGUUGC-CCAGCGGGUCC-CCGg -3'
miRNA:   3'- gCCG-CUGACGaGGUUGCCCGGGuGGC- -5'
29412 3' -61.5 NC_006151.1 + 59302 0.71 0.372473
Target:  5'- uGGCGcccGCgGCU-CAGCGGGCCCGCg- -3'
miRNA:   3'- gCCGC---UGaCGAgGUUGCCCGGGUGgc -5'
29412 3' -61.5 NC_006151.1 + 89442 0.71 0.38755
Target:  5'- uGGCGACggucacguacgccUGCaCCAGCaGGGCCCGCg- -3'
miRNA:   3'- gCCGCUG-------------ACGaGGUUG-CCCGGGUGgc -5'
29412 3' -61.5 NC_006151.1 + 102934 0.71 0.388354
Target:  5'- gGaGCGGCUGCgcgcgCUGgacGCGGcGCCCGCCGc -3'
miRNA:   3'- gC-CGCUGACGa----GGU---UGCC-CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 134774 0.71 0.388354
Target:  5'- -cGCGGCUucgGCUCC-ACGGGCCUgugagGCCGc -3'
miRNA:   3'- gcCGCUGA---CGAGGuUGCCCGGG-----UGGC- -5'
29412 3' -61.5 NC_006151.1 + 55398 0.71 0.404674
Target:  5'- gCGGCGcCUGCgCgAGCaGGCCCugCGc -3'
miRNA:   3'- -GCCGCuGACGaGgUUGcCCGGGugGC- -5'
29412 3' -61.5 NC_006151.1 + 19026 0.7 0.412158
Target:  5'- cCGGCGaggugaaGCUGCa-CGcCGGGUCCACCGg -3'
miRNA:   3'- -GCCGC-------UGACGagGUuGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 25385 0.7 0.42142
Target:  5'- aCGGCGGCggugGUUCuCGACcgcgacggGGGCgCCGCCGc -3'
miRNA:   3'- -GCCGCUGa---CGAG-GUUG--------CCCG-GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 68065 0.7 0.42142
Target:  5'- uCGGCGACggGCaggUCGGCGGGCagCGCCu -3'
miRNA:   3'- -GCCGCUGa-CGa--GGUUGCCCGg-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.