miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 3' -57.5 NC_006151.1 + 142987 0.7 0.645953
Target:  5'- cCGCGGgUGGGCCcGACCgcAGCAUCGcGGc -3'
miRNA:   3'- -GUGCCaGCCUGGuCUGG--UCGUAGC-CU- -5'
29414 3' -57.5 NC_006151.1 + 142283 0.67 0.78252
Target:  5'- -cCGG-CGG-CCAGACCGGC--CGGGa -3'
miRNA:   3'- guGCCaGCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 135161 0.68 0.754606
Target:  5'- gGCGGgcgCGGcCCGGACgGGCGcCGGc -3'
miRNA:   3'- gUGCCa--GCCuGGUCUGgUCGUaGCCu -5'
29414 3' -57.5 NC_006151.1 + 135093 0.68 0.773335
Target:  5'- gGCGG-CgGGGCCGGGCgGGCggCGGu -3'
miRNA:   3'- gUGCCaG-CCUGGUCUGgUCGuaGCCu -5'
29414 3' -57.5 NC_006151.1 + 131765 0.66 0.834567
Target:  5'- uCGCGGUCGcGACCG---CGGCcgCGGGc -3'
miRNA:   3'- -GUGCCAGC-CUGGUcugGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 130860 0.66 0.826297
Target:  5'- gGCGGcgCGGGCgGGACC-GCAgUGGGc -3'
miRNA:   3'- gUGCCa-GCCUGgUCUGGuCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 129852 0.66 0.850561
Target:  5'- aCACGGcCuGGcCCAGGCCcguGGCGUCGc- -3'
miRNA:   3'- -GUGCCaG-CCuGGUCUGG---UCGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 128540 0.68 0.745079
Target:  5'- cCACGG-CGGGCCc-GCCGGCG-CGGu -3'
miRNA:   3'- -GUGCCaGCCUGGucUGGUCGUaGCCu -5'
29414 3' -57.5 NC_006151.1 + 125642 0.66 0.858271
Target:  5'- gCACGGgCGuGAUCgaGGGCCAGC-UCGGc -3'
miRNA:   3'- -GUGCCaGC-CUGG--UCUGGUCGuAGCCu -5'
29414 3' -57.5 NC_006151.1 + 123755 0.68 0.764028
Target:  5'- gGCGGUCuuuGGCgCGGGCCccgggGGCAUCGGc -3'
miRNA:   3'- gUGCCAGc--CUG-GUCUGG-----UCGUAGCCu -5'
29414 3' -57.5 NC_006151.1 + 121346 0.66 0.826297
Target:  5'- gCGCGaccucgaGGGCCAGACgGGCG-CGGAc -3'
miRNA:   3'- -GUGCcag----CCUGGUCUGgUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 119793 0.69 0.696173
Target:  5'- gACGGUgaCGGACCAcGCCGGCuucCGGc -3'
miRNA:   3'- gUGCCA--GCCUGGUcUGGUCGua-GCCu -5'
29414 3' -57.5 NC_006151.1 + 118223 0.66 0.834567
Target:  5'- gGCGGgcgccCGGACCaccGGGCuCGGCggCGGGc -3'
miRNA:   3'- gUGCCa----GCCUGG---UCUG-GUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 111345 0.7 0.615627
Target:  5'- gACGGUCGGG-CGGAUgGGCGcgCGGGg -3'
miRNA:   3'- gUGCCAGCCUgGUCUGgUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 109451 0.68 0.753658
Target:  5'- uCGCGGcCGGccccgacGCCGGAgCGGCA-CGGGg -3'
miRNA:   3'- -GUGCCaGCC-------UGGUCUgGUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 108508 1.08 0.002322
Target:  5'- aCACGGUCGGACCAGACCAGCAUCGGAc -3'
miRNA:   3'- -GUGCCAGCCUGGUCUGGUCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 104846 0.78 0.248204
Target:  5'- gGCGGaggCGGACCAGGCCgcGGCGaCGGAg -3'
miRNA:   3'- gUGCCa--GCCUGGUCUGG--UCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 99198 0.69 0.684199
Target:  5'- cCACGGgcgugugggaggCGGugCAGGCCAGCGccUCGc- -3'
miRNA:   3'- -GUGCCa-----------GCCugGUCUGGUCGU--AGCcu -5'
29414 3' -57.5 NC_006151.1 + 97289 0.67 0.800485
Target:  5'- gGCGG-CGGGCguGuugaGCCGGCccGUCGGGc -3'
miRNA:   3'- gUGCCaGCCUGguC----UGGUCG--UAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 95178 0.66 0.842657
Target:  5'- gCACGGUCGuGugCAGGCCcuGCAggcCGa- -3'
miRNA:   3'- -GUGCCAGC-CugGUCUGGu-CGUa--GCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.