miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 136865 0.68 0.895933
Target:  5'- gCCGc--GUGACCGcCGUCGaGGAGCg -3'
miRNA:   3'- aGGCuacCACUGGC-GUAGCaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 134828 0.66 0.961522
Target:  5'- -aCGGUGGcGACCGCGcgCGcacacacgcGGGGCCc -3'
miRNA:   3'- agGCUACCaCUGGCGUa-GCa--------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 131019 0.66 0.957521
Target:  5'- gCCGGcguagcgGGUGAaggccucCCGC-UCGUcGGGGCCg -3'
miRNA:   3'- aGGCUa------CCACU-------GGCGuAGCA-UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 127379 0.68 0.908664
Target:  5'- aCCGcgGGgguggcgggGGCCGCGgccgagUCGacgGGAGCCc -3'
miRNA:   3'- aGGCuaCCa--------CUGGCGU------AGCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 122678 0.67 0.925963
Target:  5'- gCCGA-GGUG-CgCGCGgcggcCGUGGAGCUc -3'
miRNA:   3'- aGGCUaCCACuG-GCGUa----GCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 121919 0.66 0.961522
Target:  5'- gCCGAgGGgGACCGCGUgcUGGGGgCg -3'
miRNA:   3'- aGGCUaCCaCUGGCGUAgcAUCUCgG- -5'
29415 5' -54.2 NC_006151.1 + 121016 0.66 0.957896
Target:  5'- cCUGAUGGUguuuGACCGCAcgcggcacuUUGUGcuGGCCu -3'
miRNA:   3'- aGGCUACCA----CUGGCGU---------AGCAUc-UCGG- -5'
29415 5' -54.2 NC_006151.1 + 116856 0.66 0.954042
Target:  5'- gCgGcgGGgaaGGCCGCGUCGUcGccGGCCu -3'
miRNA:   3'- aGgCuaCCa--CUGGCGUAGCAuC--UCGG- -5'
29415 5' -54.2 NC_006151.1 + 113104 0.66 0.957896
Target:  5'- aCCGggGGcggGGCCGCGgaCGcGGAcGCCg -3'
miRNA:   3'- aGGCuaCCa--CUGGCGUa-GCaUCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 108356 1.14 0.002223
Target:  5'- aUCCGAUGGUGACCGCAUCGUAGAGCCg -3'
miRNA:   3'- -AGGCUACCACUGGCGUAGCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 106228 0.86 0.142213
Target:  5'- cCUGAUGGUGGCCGCGguggcCGgcGAGCCg -3'
miRNA:   3'- aGGCUACCACUGGCGUa----GCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 106162 0.71 0.783073
Target:  5'- cUUCGG-GGcgcugGACCGCGUCGcgcacccgccgcUGGAGCCg -3'
miRNA:   3'- -AGGCUaCCa----CUGGCGUAGC------------AUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 105523 0.7 0.827636
Target:  5'- aCCGcAUGGcGGCgCGCAUCGggcccGAGCUg -3'
miRNA:   3'- aGGC-UACCaCUG-GCGUAGCau---CUCGG- -5'
29415 5' -54.2 NC_006151.1 + 102543 0.69 0.867701
Target:  5'- -aCGGUGGUGGCgCGCG-CGc-GGGCCc -3'
miRNA:   3'- agGCUACCACUG-GCGUaGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 97993 0.66 0.949958
Target:  5'- gCCGGgcgGcGUGGCCGCGUaGgcGGcGCCg -3'
miRNA:   3'- aGGCUa--C-CACUGGCGUAgCauCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 97239 0.68 0.895933
Target:  5'- uUCCGGgUGGcgcGGCCGCGcaugUCG-GGGGCCc -3'
miRNA:   3'- -AGGCU-ACCa--CUGGCGU----AGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 96316 0.71 0.783073
Target:  5'- gCCGAcUGcaGGCCGCGcgCGUAGAGCg -3'
miRNA:   3'- aGGCU-ACcaCUGGCGUa-GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 92552 0.69 0.867701
Target:  5'- cUCGGUgcagcaGGUGGCCGaGUCGcuggAGGGCCg -3'
miRNA:   3'- aGGCUA------CCACUGGCgUAGCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 89554 0.66 0.961522
Target:  5'- gCCGGUGGaGGCCGCGagGcugauGGGCa -3'
miRNA:   3'- aGGCUACCaCUGGCGUagCau---CUCGg -5'
29415 5' -54.2 NC_006151.1 + 89280 0.75 0.521582
Target:  5'- gCCGcgGcGaUGGCCGCcgCGUAGAGCg -3'
miRNA:   3'- aGGCuaC-C-ACUGGCGuaGCAUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.