miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 3' -61.4 NC_006151.1 + 141572 0.66 0.670733
Target:  5'- cGAuCCUCcgccGCUCCUccccccGGGCGAGaGCCg -3'
miRNA:   3'- cCU-GGAGu---CGAGGAc-----CCCGCUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 139201 0.74 0.240622
Target:  5'- gGGGCgCUgGaGCUCCUGGcGGCGAcGCuGCCg -3'
miRNA:   3'- -CCUG-GAgU-CGAGGACC-CCGCU-CG-CGG- -5'
29417 3' -61.4 NC_006151.1 + 139074 0.72 0.323038
Target:  5'- cGAgCUCgGGCUCCgccugGGGGCGcgcauGGCGCUg -3'
miRNA:   3'- cCUgGAG-UCGAGGa----CCCCGC-----UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 138482 0.71 0.407901
Target:  5'- gGGGCaaUCAuGCUCCUc-GGCGGGCGCCc -3'
miRNA:   3'- -CCUGg-AGU-CGAGGAccCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 137534 0.67 0.601746
Target:  5'- aGGACUg-GGCggaCUGGGacGCGGGCGUCc -3'
miRNA:   3'- -CCUGGagUCGag-GACCC--CGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 136632 0.72 0.323038
Target:  5'- cGGACCccgCGGCgCCcgUGGGGCGcuCGCCc -3'
miRNA:   3'- -CCUGGa--GUCGaGG--ACCCCGCucGCGG- -5'
29417 3' -61.4 NC_006151.1 + 135789 0.68 0.543317
Target:  5'- aGGCCUU--CUCaCUGccGGGCGAGCGCg -3'
miRNA:   3'- cCUGGAGucGAG-GAC--CCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 135505 0.72 0.344075
Target:  5'- cGGCCUCGGCcgaggccaucacgUCCUcGGcGGCGAGCGg- -3'
miRNA:   3'- cCUGGAGUCG-------------AGGA-CC-CCGCUCGCgg -5'
29417 3' -61.4 NC_006151.1 + 135150 0.68 0.543317
Target:  5'- aGACC-CAGC-CCgGcGGGCGcggcccggacgGGCGCCg -3'
miRNA:   3'- cCUGGaGUCGaGGaC-CCCGC-----------UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 134965 0.73 0.288404
Target:  5'- aGGCCUCGGCcagccuccgggccUUCUcGGGCGGGCGCg -3'
miRNA:   3'- cCUGGAGUCG-------------AGGAcCCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 134776 0.7 0.423909
Target:  5'- cGGCUUCGGCUCCacgGGccugugaggccgcGGCGGcccGCGCCg -3'
miRNA:   3'- cCUGGAGUCGAGGa--CC-------------CCGCU---CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 131923 0.66 0.638233
Target:  5'- aGGGCCUCcgcggugcugccguAGCUggCCacGGGCGAGgGCg -3'
miRNA:   3'- -CCUGGAG--------------UCGA--GGacCCCGCUCgCGg -5'
29417 3' -61.4 NC_006151.1 + 131819 0.69 0.5026
Target:  5'- cGGCCUCGGCUagcgucaCCguggugaugagcGGGGCGGccgagacgcGCGCCg -3'
miRNA:   3'- cCUGGAGUCGA-------GGa-----------CCCCGCU---------CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 131036 0.66 0.680531
Target:  5'- aGGCCUCccGCUCgUcGGGGCcgGAG-GCCg -3'
miRNA:   3'- cCUGGAGu-CGAGgA-CCCCG--CUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 130923 0.67 0.631324
Target:  5'- uGGCCg-GGC-CCgcgGGGGCGGGgGCg -3'
miRNA:   3'- cCUGGagUCGaGGa--CCCCGCUCgCGg -5'
29417 3' -61.4 NC_006151.1 + 130609 0.69 0.486869
Target:  5'- -cGCCUCccaGGCgUCCUGGucgcGGCucacGAGCGCCg -3'
miRNA:   3'- ccUGGAG---UCG-AGGACC----CCG----CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 129120 0.69 0.514779
Target:  5'- aGGGCCgaGGCgCgCUGGGcGCcaaaGAGCGCCg -3'
miRNA:   3'- -CCUGGagUCGaG-GACCC-CG----CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 128788 0.71 0.367633
Target:  5'- cGGCCUCGGUcgCCUc-GGCGAGCGCg -3'
miRNA:   3'- cCUGGAGUCGa-GGAccCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 127230 0.69 0.496095
Target:  5'- gGGGCCgucacacgcgcCAGCUCUUGcGGcGCGAcGCGCg -3'
miRNA:   3'- -CCUGGa----------GUCGAGGAC-CC-CGCU-CGCGg -5'
29417 3' -61.4 NC_006151.1 + 126389 0.67 0.62935
Target:  5'- cGGGCC-CGcGCUgCUggccagccgcgucGGGGCGAuggccacGCGCCg -3'
miRNA:   3'- -CCUGGaGU-CGAgGA-------------CCCCGCU-------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.