miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 3' -65.6 NC_006151.1 + 141818 0.66 0.52716
Target:  5'- gGGCa-CGGgccgGUUCG--GGGGUCCCGCg -3'
miRNA:   3'- -CCGccGCCa---CGAGCagCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 141643 0.83 0.035547
Target:  5'- cGCGGCGGcGCgg--CGGGGCCCCGCg -3'
miRNA:   3'- cCGCCGCCaCGagcaGCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 141165 0.67 0.439046
Target:  5'- gGGCGGUcuucggGGUaGCggcaGUCGGGGCaggucaaCUGCg -3'
miRNA:   3'- -CCGCCG------CCA-CGag--CAGCCCCGg------GGCG- -5'
29418 3' -65.6 NC_006151.1 + 139918 0.72 0.223084
Target:  5'- cGCGccGCGG-GCUCGUCGccguGGGCCgCCGUc -3'
miRNA:   3'- cCGC--CGCCaCGAGCAGC----CCCGG-GGCG- -5'
29418 3' -65.6 NC_006151.1 + 139658 0.68 0.398246
Target:  5'- cGCGGCGG-GCgCGcCGcccgacaGGCCCUGCg -3'
miRNA:   3'- cCGCCGCCaCGaGCaGCc------CCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 137915 0.68 0.372684
Target:  5'- cGGCGGCGGcugccacgggcgccUGCUCcccuUUGGGGacgcgcCCCCGg -3'
miRNA:   3'- -CCGCCGCC--------------ACGAGc---AGCCCC------GGGGCg -5'
29418 3' -65.6 NC_006151.1 + 137086 0.67 0.422437
Target:  5'- cGGCGccaggccuucGCGGUGCUgGcCGGGGaCgCCUGg -3'
miRNA:   3'- -CCGC----------CGCCACGAgCaGCCCC-G-GGGCg -5'
29418 3' -65.6 NC_006151.1 + 136992 0.73 0.203545
Target:  5'- gGGCGGCGGgcgcGCgcgcacggCGcUGGGcGCCCUGCu -3'
miRNA:   3'- -CCGCCGCCa---CGa-------GCaGCCC-CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 136409 0.72 0.223084
Target:  5'- aGCGGCuacGCg---CGGGGCCCCGCg -3'
miRNA:   3'- cCGCCGccaCGagcaGCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 135918 0.66 0.482132
Target:  5'- cGGCGGUcGUGCgcgCGcucugccgCGGGGagccCCUCGCg -3'
miRNA:   3'- -CCGCCGcCACGa--GCa-------GCCCC----GGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 135109 0.69 0.352616
Target:  5'- gGGCGGCGGUaGCgCG-CGGGGCgggCUGg -3'
miRNA:   3'- -CCGCCGCCA-CGaGCaGCCCCGg--GGCg -5'
29418 3' -65.6 NC_006151.1 + 135007 0.66 0.52716
Target:  5'- uGGCGGgGGcGCggGggggcagcagCGGGGCCgCGUc -3'
miRNA:   3'- -CCGCCgCCaCGagCa---------GCCCCGGgGCG- -5'
29418 3' -65.6 NC_006151.1 + 133680 0.7 0.285101
Target:  5'- cGGCgcgcccccgaGGCGGU-CUCGUCGGcGGCgaCCCGg -3'
miRNA:   3'- -CCG----------CCGCCAcGAGCAGCC-CCG--GGGCg -5'
29418 3' -65.6 NC_006151.1 + 133378 0.7 0.291367
Target:  5'- uGGUGGCGGccgggGCggCGgcCGGGGCCgaGCg -3'
miRNA:   3'- -CCGCCGCCa----CGa-GCa-GCCCCGGggCG- -5'
29418 3' -65.6 NC_006151.1 + 133284 0.67 0.463777
Target:  5'- cGGCGGCGGcccaCGUCgagguucuccccgGGGGCggCCCGUg -3'
miRNA:   3'- -CCGCCGCCacgaGCAG-------------CCCCG--GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 133156 0.72 0.233439
Target:  5'- cGGCGGCGGcGCgggCGU--GGGCCUCGg -3'
miRNA:   3'- -CCGCCGCCaCGa--GCAgcCCCGGGGCg -5'
29418 3' -65.6 NC_006151.1 + 131445 0.76 0.115067
Target:  5'- gGGCGGCGG-GCggaaGUCcGGGCgCCGCa -3'
miRNA:   3'- -CCGCCGCCaCGag--CAGcCCCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 131021 0.74 0.152171
Target:  5'- cGGCGuaGCGGgugaaggccucccGCUCGUCGGGGCCggaggCCGUc -3'
miRNA:   3'- -CCGC--CGCCa------------CGAGCAGCCCCGG-----GGCG- -5'
29418 3' -65.6 NC_006151.1 + 130944 0.7 0.310813
Target:  5'- gGGCGGCGGggggucGCgCGggcgCGGGGgCCgGUa -3'
miRNA:   3'- -CCGCCGCCa-----CGaGCa---GCCCCgGGgCG- -5'
29418 3' -65.6 NC_006151.1 + 130898 0.77 0.099362
Target:  5'- aGGCGGCGGccgucGCcgUCGUCGGuGGCcgggCCCGCg -3'
miRNA:   3'- -CCGCCGCCa----CG--AGCAGCC-CCG----GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.