miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 57485 0.71 0.700541
Target:  5'- cGGcCUCG-CAggCGACGCGCACgCGCUc -3'
miRNA:   3'- -CC-GAGUaGUa-GCUGUGCGUGgGCGAc -5'
29419 3' -55.3 NC_006151.1 + 91169 0.71 0.700541
Target:  5'- aGGCUCA-CGUCGG---GCGCCCGCg- -3'
miRNA:   3'- -CCGAGUaGUAGCUgugCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 39341 0.71 0.710611
Target:  5'- cGGCUCggCG-CGGCGCgGCGCCgGCUc -3'
miRNA:   3'- -CCGAGuaGUaGCUGUG-CGUGGgCGAc -5'
29419 3' -55.3 NC_006151.1 + 17476 0.71 0.710611
Target:  5'- cGGCgugUCcUCGUCGGCG-GCGCgCCGCUGc -3'
miRNA:   3'- -CCG---AGuAGUAGCUGUgCGUG-GGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 102397 0.7 0.73054
Target:  5'- cGCUgGUCG-CGGCGCGCgucgcgcgGCCCGCg- -3'
miRNA:   3'- cCGAgUAGUaGCUGUGCG--------UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 120752 0.7 0.740381
Target:  5'- cGGCcgCGUCAU-GGCcuggguGCgGCGCCCGCUGg -3'
miRNA:   3'- -CCGa-GUAGUAgCUG------UG-CGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 84977 0.7 0.740381
Target:  5'- cGCUCGUCG-CGGa--GCGCCCGCa- -3'
miRNA:   3'- cCGAGUAGUaGCUgugCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 72859 0.7 0.740381
Target:  5'- uGCUCGUCGgcgaggCGGCG-GCGCCCGUg- -3'
miRNA:   3'- cCGAGUAGUa-----GCUGUgCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 94975 0.7 0.759765
Target:  5'- cGGCUCG-CGgagCGAgACGCGCUCGUa- -3'
miRNA:   3'- -CCGAGUaGUa--GCUgUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 130353 0.69 0.769291
Target:  5'- cGGCgUCGUgGUUGACggccGCGCGCgCCGCg- -3'
miRNA:   3'- -CCG-AGUAgUAGCUG----UGCGUG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 128583 0.69 0.769291
Target:  5'- gGGCgaCAUCGUCu-CGCGCGgCCCGCg- -3'
miRNA:   3'- -CCGa-GUAGUAGcuGUGCGU-GGGCGac -5'
29419 3' -55.3 NC_006151.1 + 127551 0.69 0.778693
Target:  5'- gGGCgUCGUCGUCGugGcCGCcGCCgGCg- -3'
miRNA:   3'- -CCG-AGUAGUAGCugU-GCG-UGGgCGac -5'
29419 3' -55.3 NC_006151.1 + 78704 0.69 0.778693
Target:  5'- gGGcCUCGUCGccgCGACG-GCGCCCGUg- -3'
miRNA:   3'- -CC-GAGUAGUa--GCUGUgCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 68396 0.69 0.778693
Target:  5'- cGGC-CAccUCcaUGGCGCGCGCCCGCc- -3'
miRNA:   3'- -CCGaGU--AGuaGCUGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 18384 0.69 0.787962
Target:  5'- aGGCUCA-CGUaCGGCcccuCGUAgCCGCUGu -3'
miRNA:   3'- -CCGAGUaGUA-GCUGu---GCGUgGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 95762 0.69 0.797089
Target:  5'- aGGCUC-UCGUCGGCGgcgaGCAUgCCGCg- -3'
miRNA:   3'- -CCGAGuAGUAGCUGUg---CGUG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 55077 0.69 0.797089
Target:  5'- gGGCUCggCcgCGGCGCGC-CUCGUg- -3'
miRNA:   3'- -CCGAGuaGuaGCUGUGCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 118356 0.69 0.797089
Target:  5'- cGCgccugCGaggCGGCGCGCGCCCGCUu -3'
miRNA:   3'- cCGagua-GUa--GCUGUGCGUGGGCGAc -5'
29419 3' -55.3 NC_006151.1 + 113875 0.69 0.797089
Target:  5'- cGGCUCcugcggcgcaaGUCGUCGGC-CGCGCggcgcaagaCGCUGa -3'
miRNA:   3'- -CCGAG-----------UAGUAGCUGuGCGUGg--------GCGAC- -5'
29419 3' -55.3 NC_006151.1 + 103304 0.69 0.797089
Target:  5'- cGGCUCG-CG-CGGCGCGaCGCCgaGCUGc -3'
miRNA:   3'- -CCGAGUaGUaGCUGUGC-GUGGg-CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.