miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 141707 0.71 0.350132
Target:  5'- -gCGGCGGaCGCGGuGCCCG-GGGCGu -3'
miRNA:   3'- caGCUGCCgGCGCC-CGGGUaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 141652 0.71 0.342739
Target:  5'- -gCGGCGGggccCCGCGGGCUCGUuGugGAg -3'
miRNA:   3'- caGCUGCC----GGCGCCCGGGUAcCugCU- -5'
29419 5' -62.5 NC_006151.1 + 141377 0.66 0.64535
Target:  5'- --gGACGGggGCGGGCCCcgGGcaaacaGCGGc -3'
miRNA:   3'- cagCUGCCggCGCCCGGGuaCC------UGCU- -5'
29419 5' -62.5 NC_006151.1 + 141279 0.71 0.326167
Target:  5'- cUCGGCGGCUGCgguccgaugacgguGGGCUCGUacgcGGGCGGg -3'
miRNA:   3'- cAGCUGCCGGCG--------------CCCGGGUA----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 139907 0.69 0.447342
Target:  5'- -aCGACGgcuuccgcGCCGCGGGCucgucgCCGUGGGCc- -3'
miRNA:   3'- caGCUGC--------CGGCGCCCG------GGUACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 137909 0.71 0.350132
Target:  5'- gGUCGACGGCgGCGGcuGCCac-GGGCGc -3'
miRNA:   3'- -CAGCUGCCGgCGCC--CGGguaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 137462 0.67 0.557786
Target:  5'- -aCGACGGCCucgaggaGGcGCCCugGGACGAc -3'
miRNA:   3'- caGCUGCCGGcg-----CC-CGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 136627 0.69 0.438673
Target:  5'- cGUC-ACGGaccCCGCGGcGCCCGUgGGGCGc -3'
miRNA:   3'- -CAGcUGCC---GGCGCC-CGGGUA-CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 135953 0.68 0.527346
Target:  5'- cUCG-CGG-CGCGGGacguccucgaggCCAUGGACGAg -3'
miRNA:   3'- cAGCuGCCgGCGCCCg-----------GGUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 135159 0.68 0.510495
Target:  5'- -cCGGCGGgCGC-GGCCC--GGACGGg -3'
miRNA:   3'- caGCUGCCgGCGcCCGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 135088 0.69 0.464959
Target:  5'- -gCGGgGGCgGCGGGgCCGggcGGGCGGc -3'
miRNA:   3'- caGCUgCCGgCGCCCgGGUa--CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 134477 0.68 0.510495
Target:  5'- --gGACGGCCGCcacuGGGCCUAcgucuucGGGCGc -3'
miRNA:   3'- cagCUGCCGGCG----CCCGGGUa------CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 133884 0.73 0.275063
Target:  5'- -gCGGCGGCCGUGGGCugauCCAccgGGACu- -3'
miRNA:   3'- caGCUGCCGGCGCCCG----GGUa--CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 133480 0.71 0.350132
Target:  5'- --aGGCGGCCGCGGGCgUCAccuUGG-CGGc -3'
miRNA:   3'- cagCUGCCGGCGCCCG-GGU---ACCuGCU- -5'
29419 5' -62.5 NC_006151.1 + 133392 0.73 0.275063
Target:  5'- -gCGGCGGCCG-GGGCCgAgcGGGCGGu -3'
miRNA:   3'- caGCUGCCGGCgCCCGGgUa-CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 133154 0.68 0.482931
Target:  5'- cUCGGCGGCggCGCGGGC--GUGGGCc- -3'
miRNA:   3'- cAGCUGCCG--GCGCCCGggUACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 132620 0.66 0.635569
Target:  5'- gGUCGACGcucgcguccGCCGuCGGcGCCCGgaccUGGGCc- -3'
miRNA:   3'- -CAGCUGC---------CGGC-GCC-CGGGU----ACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 131769 0.67 0.557786
Target:  5'- gGUCGcgaccGCGGCCGCGGGCgCCGccGuCGu -3'
miRNA:   3'- -CAGC-----UGCCGGCGCCCG-GGUacCuGCu -5'
29419 5' -62.5 NC_006151.1 + 131735 0.68 0.501232
Target:  5'- -gCGG-GGUgGCGGGCCC--GGGCGAg -3'
miRNA:   3'- caGCUgCCGgCGCCCGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 130914 0.75 0.208464
Target:  5'- cGUCGuCGGUgGcCGGGCCCGcggGGGCGGg -3'
miRNA:   3'- -CAGCuGCCGgC-GCCCGGGUa--CCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.