miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 5' -59.6 NC_006151.1 + 109800 0.66 0.798551
Target:  5'- gCCGgaguuUGCGCCGcCGgccCCGCGCUCcccgcuggCGGa -3'
miRNA:   3'- -GGC-----ACGCGGCaGC---GGCGCGAGaa------GCU- -5'
29420 5' -59.6 NC_006151.1 + 101642 0.66 0.798551
Target:  5'- aCCaGUuCGCCGcCGugcCCGCGCUCUaCGGc -3'
miRNA:   3'- -GG-CAcGCGGCaGC---GGCGCGAGAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 48605 0.66 0.798551
Target:  5'- gUCGUGCcuGCCGcCGCCGC-CgCUUCu- -3'
miRNA:   3'- -GGCACG--CGGCaGCGGCGcGaGAAGcu -5'
29420 5' -59.6 NC_006151.1 + 112741 0.66 0.78981
Target:  5'- cCCGUGCGCCacggccgucuucGUgGCCGC-CUUcagUUCGu -3'
miRNA:   3'- -GGCACGCGG------------CAgCGGCGcGAG---AAGCu -5'
29420 5' -59.6 NC_006151.1 + 127561 0.66 0.78981
Target:  5'- gUCGUG-GCCGcCGCCGgCGcCUCgUUCGc -3'
miRNA:   3'- -GGCACgCGGCaGCGGC-GC-GAG-AAGCu -5'
29420 5' -59.6 NC_006151.1 + 11928 0.66 0.78981
Target:  5'- ---cGCGCCGcCGCCGC-CUCcUCa- -3'
miRNA:   3'- ggcaCGCGGCaGCGGCGcGAGaAGcu -5'
29420 5' -59.6 NC_006151.1 + 60795 0.66 0.780937
Target:  5'- aCGUGCacGCUGggcUCGCCGCGCagCUccaCGAg -3'
miRNA:   3'- gGCACG--CGGC---AGCGGCGCGa-GAa--GCU- -5'
29420 5' -59.6 NC_006151.1 + 94018 0.66 0.780937
Target:  5'- cCCGcaGCGCCGcgCGCacguaGCGCUCgcgCGc -3'
miRNA:   3'- -GGCa-CGCGGCa-GCGg----CGCGAGaa-GCu -5'
29420 5' -59.6 NC_006151.1 + 114911 0.66 0.780937
Target:  5'- cCCGgGCGCaCGgccccggCGUCGCGCUCggccucCGGg -3'
miRNA:   3'- -GGCaCGCG-GCa------GCGGCGCGAGaa----GCU- -5'
29420 5' -59.6 NC_006151.1 + 125460 0.66 0.780937
Target:  5'- cCCcaGCGCCGUggccacgGCCGCGCUCg---- -3'
miRNA:   3'- -GGcaCGCGGCAg------CGGCGCGAGaagcu -5'
29420 5' -59.6 NC_006151.1 + 98385 0.66 0.771939
Target:  5'- gCGcUGCGCCuGgccUGCCGCGC-CUacgUCGAg -3'
miRNA:   3'- gGC-ACGCGG-Ca--GCGGCGCGaGA---AGCU- -5'
29420 5' -59.6 NC_006151.1 + 107088 0.66 0.771939
Target:  5'- gCUG-GCGgUGUCGCgCGUGCUCUgggCGc -3'
miRNA:   3'- -GGCaCGCgGCAGCG-GCGCGAGAa--GCu -5'
29420 5' -59.6 NC_006151.1 + 127859 0.66 0.771939
Target:  5'- gCCGgaggggGCGCCGccCGCCGCcguccaccuccaGCUCgUCGu -3'
miRNA:   3'- -GGCa-----CGCGGCa-GCGGCG------------CGAGaAGCu -5'
29420 5' -59.6 NC_006151.1 + 3621 0.66 0.771939
Target:  5'- gCCGUG-GCCGUCcccgcggaggGCCGCGC-CggaGAg -3'
miRNA:   3'- -GGCACgCGGCAG----------CGGCGCGaGaagCU- -5'
29420 5' -59.6 NC_006151.1 + 87311 0.66 0.771939
Target:  5'- cCCGUGgcgcaCGCCGU-GCCGgCGCUCc-CGGg -3'
miRNA:   3'- -GGCAC-----GCGGCAgCGGC-GCGAGaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 119471 0.66 0.762825
Target:  5'- gCCGUGCGCuaCGUgGCCG-GCagCcUCGAc -3'
miRNA:   3'- -GGCACGCG--GCAgCGGCgCGa-GaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 87437 0.66 0.762825
Target:  5'- gCCGUGCccGCCGcCGCCGCggccgcccccGCUC--CGGc -3'
miRNA:   3'- -GGCACG--CGGCaGCGGCG----------CGAGaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 76126 0.66 0.762825
Target:  5'- uCUG-GUcgGCCGU-GCCGCGCUCgaaCGAg -3'
miRNA:   3'- -GGCaCG--CGGCAgCGGCGCGAGaa-GCU- -5'
29420 5' -59.6 NC_006151.1 + 76345 0.66 0.762825
Target:  5'- -gGUGCGgcCCGUCGCgCGCGaUCaUCGGc -3'
miRNA:   3'- ggCACGC--GGCAGCG-GCGCgAGaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 48511 0.66 0.761908
Target:  5'- gCCGUGCacaaggacucccuGCCGcCGCUGCGCUauaaUgGAg -3'
miRNA:   3'- -GGCACG-------------CGGCaGCGGCGCGAga--AgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.