miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 102226 0.7 0.42391
Target:  5'- aCGGggaGgCGCCGUGCgccgucgCCGCGCUCUu -3'
miRNA:   3'- gGUCaagCgGCGGCACG-------GGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 49999 0.7 0.424763
Target:  5'- uCCGcGUUUGCgCGCCGcgcgcgcgGCCCGCGCg-- -3'
miRNA:   3'- -GGU-CAAGCG-GCGGCa-------CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 123853 0.7 0.428185
Target:  5'- gCGGggCGCCGUCGcgcuagcgcugcugcUGCUgGCGCUCg -3'
miRNA:   3'- gGUCaaGCGGCGGC---------------ACGGgCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 92199 0.7 0.433348
Target:  5'- gCCGacgCGCCGCCGcGgCCGCGCUg- -3'
miRNA:   3'- -GGUcaaGCGGCGGCaCgGGCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 52475 0.7 0.450817
Target:  5'- gCCGGUagGCCGCCGUGaCgGC-CUCg -3'
miRNA:   3'- -GGUCAagCGGCGGCACgGgCGcGAGa -5'
29421 3' -61.2 NC_006151.1 + 21270 0.7 0.450817
Target:  5'- aCCAGgagcgCGCCcaucGCgGUGCCCGUGC-Cg -3'
miRNA:   3'- -GGUCaa---GCGG----CGgCACGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 77669 0.7 0.450817
Target:  5'- -uGGUcUCGCUGCCGgcGUCgGCGCUCUc -3'
miRNA:   3'- ggUCA-AGCGGCGGCa-CGGgCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 51208 0.7 0.459695
Target:  5'- gCCAGcagGCCGCCcgcggGCCCGCGCa-- -3'
miRNA:   3'- -GGUCaagCGGCGGca---CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 69429 0.7 0.468665
Target:  5'- gCCAGgcggCGCCGCCGccGUUCGCGUccUCg -3'
miRNA:   3'- -GGUCaa--GCGGCGGCa-CGGGCGCG--AGa -5'
29421 3' -61.2 NC_006151.1 + 115109 0.7 0.468665
Target:  5'- uCCAGgccggCGCCGCCG-GCgaCGCGCg-- -3'
miRNA:   3'- -GGUCaa---GCGGCGGCaCGg-GCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 135399 0.7 0.468665
Target:  5'- uCCAGgccgUCGUCGCCGgagGCCUcgugGCGCg-- -3'
miRNA:   3'- -GGUCa---AGCGGCGGCa--CGGG----CGCGaga -5'
29421 3' -61.2 NC_006151.1 + 115197 0.69 0.477724
Target:  5'- gCCAGcgCGCCGCgG-GCgCGCGCg-- -3'
miRNA:   3'- -GGUCaaGCGGCGgCaCGgGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 97921 0.69 0.477724
Target:  5'- gCCG--UCGCCGCCGaggccgcGCCCGCcCUCg -3'
miRNA:   3'- -GGUcaAGCGGCGGCa------CGGGCGcGAGa -5'
29421 3' -61.2 NC_006151.1 + 19479 0.69 0.486869
Target:  5'- gCAGguaGUCGCCGaUGCCC-CGCUCc -3'
miRNA:   3'- gGUCaagCGGCGGC-ACGGGcGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 107499 0.69 0.486869
Target:  5'- cCCG--UCGCCGCCGgucgacccGCCCaCGCUCc -3'
miRNA:   3'- -GGUcaAGCGGCGGCa-------CGGGcGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 137306 0.69 0.496096
Target:  5'- gCgGGUUcCGCCGCgCgGUGCUcgaCGCGCUCg -3'
miRNA:   3'- -GgUCAA-GCGGCG-G-CACGG---GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 104603 0.69 0.496096
Target:  5'- gCAGccgCGgCGCCGagaucUGCCgCGCGCUCg -3'
miRNA:   3'- gGUCaa-GCgGCGGC-----ACGG-GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 87605 0.69 0.496096
Target:  5'- gCCAGcUCgGCCGCCGUgGCCUgccaGCGCg-- -3'
miRNA:   3'- -GGUCaAG-CGGCGGCA-CGGG----CGCGaga -5'
29421 3' -61.2 NC_006151.1 + 86727 0.69 0.5054
Target:  5'- gCGGcgCGCCGCCGcgagGCCgGCGUgcgCg -3'
miRNA:   3'- gGUCaaGCGGCGGCa---CGGgCGCGa--Ga -5'
29421 3' -61.2 NC_006151.1 + 119728 0.69 0.512898
Target:  5'- gCAGgacacguaccgCGCCGCCGUGgaCCG-GCUCUg -3'
miRNA:   3'- gGUCaa---------GCGGCGGCACg-GGCgCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.