miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 5' -56.4 NC_006151.1 + 117807 0.66 0.912932
Target:  5'- gCGGGGCGggGCCccacgcuuuaagaccCGgccgGGGCGGGCCGg -3'
miRNA:   3'- -GCUCUGCa-UGGa--------------GCa---CCUGCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 2079 0.66 0.912347
Target:  5'- cCGAGAUGgccuccACCUUGaUGGgcccgaGCGGGCCGc -3'
miRNA:   3'- -GCUCUGCa-----UGGAGC-ACC------UGCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 54646 0.66 0.912347
Target:  5'- gCGGcGCGaGCgCUgCGUGGACGAGCaCGa -3'
miRNA:   3'- -GCUcUGCaUG-GA-GCACCUGCUCG-GCa -5'
29421 5' -56.4 NC_006151.1 + 119115 0.66 0.906366
Target:  5'- uGAGccgcGCGgccgGCCUCGUGGGgGcGCUGg -3'
miRNA:   3'- gCUC----UGCa---UGGAGCACCUgCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 13398 0.66 0.906366
Target:  5'- gGGGACGcGCCggccaaUGGGgGAGCCGg -3'
miRNA:   3'- gCUCUGCaUGGagc---ACCUgCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 56168 0.66 0.900157
Target:  5'- cCGAGgaccGCGUGCuCUCGcUGGcCGuGCCGc -3'
miRNA:   3'- -GCUC----UGCAUG-GAGC-ACCuGCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 103911 0.66 0.893721
Target:  5'- gGuGGCGcgcgcgGCCgcCGUGGAgGAGCCGc -3'
miRNA:   3'- gCuCUGCa-----UGGa-GCACCUgCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 84659 0.66 0.893721
Target:  5'- gCGGGcGCGcGCCUCGaggccgaggUGGACGAGCa-- -3'
miRNA:   3'- -GCUC-UGCaUGGAGC---------ACCUGCUCGgca -5'
29421 5' -56.4 NC_006151.1 + 75042 0.66 0.887061
Target:  5'- gGGGACGUccACCUCGggcGcGACGAagaagucaaagGCCGg -3'
miRNA:   3'- gCUCUGCA--UGGAGCa--C-CUGCU-----------CGGCa -5'
29421 5' -56.4 NC_006151.1 + 84807 0.66 0.887061
Target:  5'- cCGAGGCG-ACCgcggcCGcGGACGgGGCCGc -3'
miRNA:   3'- -GCUCUGCaUGGa----GCaCCUGC-UCGGCa -5'
29421 5' -56.4 NC_006151.1 + 88216 0.66 0.887061
Target:  5'- gCGAGGCGcGCCUCcggGGGCacgcagaGGCCGUc -3'
miRNA:   3'- -GCUCUGCaUGGAGca-CCUGc------UCGGCA- -5'
29421 5' -56.4 NC_006151.1 + 128218 0.66 0.887061
Target:  5'- -cAGGCGUGCgacgagCUCGUGGGCGccaggucGCCGa -3'
miRNA:   3'- gcUCUGCAUG------GAGCACCUGCu------CGGCa -5'
29421 5' -56.4 NC_006151.1 + 78112 0.67 0.880182
Target:  5'- cCGGGGCGgacGCCaUCcUGcGGCGGGCCGc -3'
miRNA:   3'- -GCUCUGCa--UGG-AGcAC-CUGCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 71283 0.67 0.880182
Target:  5'- gGAGACG-GCCUCGggGGccgGCGAGCa-- -3'
miRNA:   3'- gCUCUGCaUGGAGCa-CC---UGCUCGgca -5'
29421 5' -56.4 NC_006151.1 + 51386 0.67 0.880182
Target:  5'- uCGuGACGcgGCC-CG-GGGCGAGCgCGUc -3'
miRNA:   3'- -GCuCUGCa-UGGaGCaCCUGCUCG-GCA- -5'
29421 5' -56.4 NC_006151.1 + 13943 0.67 0.865782
Target:  5'- gGGGGCGggcGCCcCGgGGACGcGCCGg -3'
miRNA:   3'- gCUCUGCa--UGGaGCaCCUGCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 97385 0.67 0.858271
Target:  5'- gGGGGCGUcgGCCUCGUc--CGuGCCGUg -3'
miRNA:   3'- gCUCUGCA--UGGAGCAccuGCuCGGCA- -5'
29421 5' -56.4 NC_006151.1 + 31971 0.67 0.858271
Target:  5'- gCGGGACGUGCC-CGccgccUGG--GAGCCGg -3'
miRNA:   3'- -GCUCUGCAUGGaGC-----ACCugCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 23923 0.67 0.850561
Target:  5'- --cGACGgGCCgccggucgUCGUGGACGGgguGCCGUa -3'
miRNA:   3'- gcuCUGCaUGG--------AGCACCUGCU---CGGCA- -5'
29421 5' -56.4 NC_006151.1 + 55149 0.68 0.834567
Target:  5'- gGAGACgGUGCgCUCGUaccucGACGAGaCCGg -3'
miRNA:   3'- gCUCUG-CAUG-GAGCAc----CUGCUC-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.