miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 2116 0.71 0.623171
Target:  5'- gCGGGGcCGGC-CGuCGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCaGUUGuGC-GUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 82179 0.71 0.633368
Target:  5'- cCGGGGgcgCGAUcauGCGCAuCCGCUCGG-CGg -3'
miRNA:   3'- -GCUCCa--GUUG---UGCGU-GGCGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 38681 0.71 0.643563
Target:  5'- cCGGGGgcccCGGCGCaaGCGCCGCucccUCGGACu -3'
miRNA:   3'- -GCUCCa---GUUGUG--CGUGGCG----AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 33116 0.71 0.653749
Target:  5'- -aAGGUCugGGCGCGUGCCGCgggccgagugUCGGGCGa -3'
miRNA:   3'- gcUCCAG--UUGUGCGUGGCG----------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 81908 0.71 0.653749
Target:  5'- --cGGUCGcgGCGCGCCGCcUCGGAgAa -3'
miRNA:   3'- gcuCCAGUugUGCGUGGCG-AGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 95994 0.71 0.66087
Target:  5'- gGGGGcCAccucguccgugaugGCGCGCACCGCcuccUCGGugGu -3'
miRNA:   3'- gCUCCaGU--------------UGUGCGUGGCG----AGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 31582 0.71 0.662902
Target:  5'- aCGGGGgggCGGCGCGCuccgcgcucccccGCCGCcUGGGCGg -3'
miRNA:   3'- -GCUCCa--GUUGUGCG-------------UGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 5736 0.71 0.663918
Target:  5'- cCGGGGUCcgaGGC-CGCGCCGCcggccCGGGCu -3'
miRNA:   3'- -GCUCCAG---UUGuGCGUGGCGa----GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 102335 0.71 0.663918
Target:  5'- gGAGG-C-GCGCGCGCUGCU-GGACGu -3'
miRNA:   3'- gCUCCaGuUGUGCGUGGCGAgCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 64462 0.71 0.663918
Target:  5'- gGAuGG-CGGCGCGCGCCGC-CGcGGCGg -3'
miRNA:   3'- gCU-CCaGUUGUGCGUGGCGaGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 19652 0.7 0.674062
Target:  5'- uCGAGGgugaAGUugGCGCC-CUCGGACAc -3'
miRNA:   3'- -GCUCCag--UUGugCGUGGcGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 98946 0.7 0.684171
Target:  5'- cCGAGG-CGGCGCGgGCCGU--GGACGa -3'
miRNA:   3'- -GCUCCaGUUGUGCgUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 89143 0.7 0.684171
Target:  5'- gGGGcGUCGAgacCGCGC-CCGcCUCGGGCGa -3'
miRNA:   3'- gCUC-CAGUU---GUGCGuGGC-GAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 55469 0.7 0.694238
Target:  5'- cCGGGGg--GCGCGCGCCcgGCgccgCGGACGg -3'
miRNA:   3'- -GCUCCaguUGUGCGUGG--CGa---GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 55523 0.7 0.694238
Target:  5'- aCGAGGUCAucgacaucACGCGCGCCa--UGGGCGa -3'
miRNA:   3'- -GCUCCAGU--------UGUGCGUGGcgaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 86654 0.7 0.694238
Target:  5'- gGAGGcgcUCAcGCGCGCGCUGCUCucGACGg -3'
miRNA:   3'- gCUCC---AGU-UGUGCGUGGCGAGc-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 122265 0.7 0.714209
Target:  5'- gCGAGGcCAcgcACAgGCGCCuGCUCGGcuGCGu -3'
miRNA:   3'- -GCUCCaGU---UGUgCGUGG-CGAGCC--UGU- -5'
29422 3' -56.2 NC_006151.1 + 104546 0.7 0.718172
Target:  5'- aCGAGGcCGagcuggccgcccuggGCGCGCGgCGCgCGGACGu -3'
miRNA:   3'- -GCUCCaGU---------------UGUGCGUgGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 118096 0.7 0.721137
Target:  5'- uCGAGG-CGcugcgccgcgaccuGCugGCGCUGCUCGuGGCGc -3'
miRNA:   3'- -GCUCCaGU--------------UGugCGUGGCGAGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 100058 0.7 0.724095
Target:  5'- aCGGGGUCGuGCGCGCGgCCGCcgaggugcUCGaGGCGc -3'
miRNA:   3'- -GCUCCAGU-UGUGCGU-GGCG--------AGC-CUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.