miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 3464 0.69 0.753244
Target:  5'- gGUGCUCgggcauggGCCCgaGCGggCGCCGg -3'
miRNA:   3'- gCGCGAGaaa-----CGGGagUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 102250 0.69 0.762761
Target:  5'- cCGCGCUCUUcgaGCCCaUCcuggGCGcgCuGCCGg -3'
miRNA:   3'- -GCGCGAGAAa--CGGG-AG----UGCuaG-CGGC- -5'
29423 3' -56.5 NC_006151.1 + 77688 0.68 0.772162
Target:  5'- gGCGCUCUcgcugacGCUCgugCACGAcCGCCa -3'
miRNA:   3'- gCGCGAGAaa-----CGGGa--GUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 38962 0.68 0.774959
Target:  5'- gGCGCUCaccuucgacccggccGCCCUgGCGcacAUCGCCGc -3'
miRNA:   3'- gCGCGAGaaa------------CGGGAgUGC---UAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 112391 0.68 0.78144
Target:  5'- uCGCGCagCgcgGCCUcCGgGAUCGCCGc -3'
miRNA:   3'- -GCGCGa-GaaaCGGGaGUgCUAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 78773 0.68 0.790585
Target:  5'- gGCGCUCcugaccGCCUUCGgCGAcUCGCCc -3'
miRNA:   3'- gCGCGAGaaa---CGGGAGU-GCU-AGCGGc -5'
29423 3' -56.5 NC_006151.1 + 98722 0.68 0.790585
Target:  5'- gCGCGCUCgugcaGCCCcgcuUCGCGA-CGCUc -3'
miRNA:   3'- -GCGCGAGaaa--CGGG----AGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 98269 0.68 0.799588
Target:  5'- gCGCGCUCgaggagGCCgacCACGccGUCGCCa -3'
miRNA:   3'- -GCGCGAGaaa---CGGga-GUGC--UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 61734 0.68 0.799588
Target:  5'- cCGUGCUgCUggcgcacGCCCUguaCGCGGUCGCgGg -3'
miRNA:   3'- -GCGCGA-GAaa-----CGGGA---GUGCUAGCGgC- -5'
29423 3' -56.5 NC_006151.1 + 53115 0.68 0.80844
Target:  5'- cCGUaCUCgagcGCCUUCAUGAgcUCGCCGa -3'
miRNA:   3'- -GCGcGAGaaa-CGGGAGUGCU--AGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 113920 0.68 0.80844
Target:  5'- aCGCGCgCg--GCCC--GCGAUCGCUa -3'
miRNA:   3'- -GCGCGaGaaaCGGGagUGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 135165 0.67 0.817134
Target:  5'- gGCGCg----GCCCggACGggCGCCGg -3'
miRNA:   3'- gCGCGagaaaCGGGagUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 60656 0.67 0.817134
Target:  5'- cCGCGC-Cgc-GUCCUCGCucccGUCGCCGc -3'
miRNA:   3'- -GCGCGaGaaaCGGGAGUGc---UAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 86586 0.67 0.817134
Target:  5'- gCGCGCUCcgaGCUgCUgGCGcgCGCCGc -3'
miRNA:   3'- -GCGCGAGaaaCGG-GAgUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 67179 0.67 0.817134
Target:  5'- -cCGCUCaucGCCCUCGCGcUgGCCa -3'
miRNA:   3'- gcGCGAGaaaCGGGAGUGCuAgCGGc -5'
29423 3' -56.5 NC_006151.1 + 105455 0.67 0.824816
Target:  5'- gCGCGC-CgggGCCCUgggcgacuucuucCGCGA-CGCCGg -3'
miRNA:   3'- -GCGCGaGaaaCGGGA-------------GUGCUaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 57116 0.67 0.825661
Target:  5'- gCGCGC-CgccgcGCCCg-GCGGUCGCCc -3'
miRNA:   3'- -GCGCGaGaaa--CGGGagUGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 31153 0.67 0.826505
Target:  5'- gGCGCUCUcucugggucgcagcGCCCUaaacuuggCACGGUCcGCCGc -3'
miRNA:   3'- gCGCGAGAaa------------CGGGA--------GUGCUAG-CGGC- -5'
29423 3' -56.5 NC_006151.1 + 57731 0.67 0.834014
Target:  5'- cCGCGCgc---GCCCgCACGGcgCGCCGc -3'
miRNA:   3'- -GCGCGagaaaCGGGaGUGCUa-GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 94039 0.67 0.834014
Target:  5'- aGCGCUCgc-GCgC-CGCGGcgUCGCCGc -3'
miRNA:   3'- gCGCGAGaaaCGgGaGUGCU--AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.