miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 142946 0.71 0.643563
Target:  5'- aCGCGCgccc-GCCCUCGCccAUCGCCa -3'
miRNA:   3'- -GCGCGagaaaCGGGAGUGc-UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 141861 0.67 0.842184
Target:  5'- uCGCGC-Cgc-GCCCUCugG--UGCCGg -3'
miRNA:   3'- -GCGCGaGaaaCGGGAGugCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 138160 0.67 0.850165
Target:  5'- gCGCGCUCgagGCCUUCgugGCGGacgUgGCCa -3'
miRNA:   3'- -GCGCGAGaaaCGGGAG---UGCU---AgCGGc -5'
29423 3' -56.5 NC_006151.1 + 137330 0.66 0.90021
Target:  5'- aCGCGCUCgcgcUGCUCUUcccCGAg-GCCGa -3'
miRNA:   3'- -GCGCGAGaa--ACGGGAGu--GCUagCGGC- -5'
29423 3' -56.5 NC_006151.1 + 137087 0.66 0.89372
Target:  5'- gGCGC-Cag-GCCUUCGCGGUgcugGCCGg -3'
miRNA:   3'- gCGCGaGaaaCGGGAGUGCUAg---CGGC- -5'
29423 3' -56.5 NC_006151.1 + 136808 0.67 0.842184
Target:  5'- cCGCGCUCgcgGCCgaCGCGccgCGCgGg -3'
miRNA:   3'- -GCGCGAGaaaCGGgaGUGCua-GCGgC- -5'
29423 3' -56.5 NC_006151.1 + 136653 0.66 0.89372
Target:  5'- gGCGCUCgc--CCCUCggggagcgcGCGGcCGCCGc -3'
miRNA:   3'- gCGCGAGaaacGGGAG---------UGCUaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 135930 0.7 0.694239
Target:  5'- gCGCGCUCUgccgcggggaGcCCCUCGCGG-CGCgGg -3'
miRNA:   3'- -GCGCGAGAaa--------C-GGGAGUGCUaGCGgC- -5'
29423 3' -56.5 NC_006151.1 + 135165 0.67 0.817134
Target:  5'- gGCGCg----GCCCggACGggCGCCGg -3'
miRNA:   3'- gCGCGagaaaCGGGagUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 134415 0.66 0.89372
Target:  5'- cCGCGCgagCUggugcUGCCCccCGgGggCGCCGa -3'
miRNA:   3'- -GCGCGa--GAa----ACGGGa-GUgCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 133451 0.66 0.880063
Target:  5'- gGCGCUCUUgGCCCcggucgaggccCGCGAggcgGCCGc -3'
miRNA:   3'- gCGCGAGAAaCGGGa----------GUGCUag--CGGC- -5'
29423 3' -56.5 NC_006151.1 + 132768 0.69 0.733902
Target:  5'- aGCGC-Cgg-GCCCUCGuCGAagGCCa -3'
miRNA:   3'- gCGCGaGaaaCGGGAGU-GCUagCGGc -5'
29423 3' -56.5 NC_006151.1 + 130403 0.67 0.834014
Target:  5'- aGCGC-CUc-GCCCgcgagCGCGGgcgCGCCGa -3'
miRNA:   3'- gCGCGaGAaaCGGGa----GUGCUa--GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 128132 0.66 0.872904
Target:  5'- aGCGCUCcguggGCCCgccgUACGAg-GCCa -3'
miRNA:   3'- gCGCGAGaaa--CGGGa---GUGCUagCGGc -5'
29423 3' -56.5 NC_006151.1 + 127243 0.67 0.834014
Target:  5'- gCGCcaGCUCUUgcgGCgCgacgCGCGGUgGCCGg -3'
miRNA:   3'- -GCG--CGAGAAa--CGgGa---GUGCUAgCGGC- -5'
29423 3' -56.5 NC_006151.1 + 122541 0.66 0.880063
Target:  5'- aCGUGUUCcg-GCCCgccUCGCGG-CGCCu -3'
miRNA:   3'- -GCGCGAGaaaCGGG---AGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 120340 0.66 0.887003
Target:  5'- gCGCGCgcccgCgugGCCgggCUCGCGggCGCCu -3'
miRNA:   3'- -GCGCGa----GaaaCGG---GAGUGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 118335 0.66 0.865531
Target:  5'- aGCGCcgCgcccGCCCUCuCGcgCGCCu -3'
miRNA:   3'- gCGCGa-Gaaa-CGGGAGuGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 113942 0.66 0.90021
Target:  5'- aCGCGCccuaCUUUGCCUaCGCGGcCGCg- -3'
miRNA:   3'- -GCGCGa---GAAACGGGaGUGCUaGCGgc -5'
29423 3' -56.5 NC_006151.1 + 113920 0.68 0.80844
Target:  5'- aCGCGCgCg--GCCC--GCGAUCGCUa -3'
miRNA:   3'- -GCGCGaGaaaCGGGagUGCUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.