miRNA display CGI


Results 21 - 40 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 20714 0.73 0.362408
Target:  5'- -cCCGCGuCCGgCGGGGCCgGGCGCg -3'
miRNA:   3'- aaGGUGCuGGCgGUCUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 46539 0.73 0.362408
Target:  5'- gUCCGCGGaCGaCCAGAGgCCGGCGCc -3'
miRNA:   3'- aAGGUGCUgGC-GGUCUUgGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 89946 0.73 0.370366
Target:  5'- gUCCGCGggcGCgGCCAgGAACCgGGCGCg -3'
miRNA:   3'- aAGGUGC---UGgCGGU-CUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 122171 0.73 0.377629
Target:  5'- aUCgGCGgcgggcucgugguGCCGCCGGAgcuguacgACCCGGCGCa -3'
miRNA:   3'- aAGgUGC-------------UGGCGGUCU--------UGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 79594 0.73 0.386636
Target:  5'- -aCCGgGGa-GCCGGAGCCCGGCGCc -3'
miRNA:   3'- aaGGUgCUggCGGUCUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 67272 0.73 0.386636
Target:  5'- aUCCACGcgcgccugcGCCGCUGGuGCCgCGACGCg -3'
miRNA:   3'- aAGGUGC---------UGGCGGUCuUGG-GCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 129684 0.73 0.394946
Target:  5'- -aCCGucCGGCCGCCGuGGACCgCGGCGCc -3'
miRNA:   3'- aaGGU--GCUGGCGGU-CUUGG-GCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 136718 0.72 0.40337
Target:  5'- aUCCGCGACacguCGcCCAGAACgUGACGCc -3'
miRNA:   3'- aAGGUGCUG----GC-GGUCUUGgGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 39841 0.72 0.40337
Target:  5'- cUCCuGCGGCCGCCGGGGCCU--CGCc -3'
miRNA:   3'- aAGG-UGCUGGCGGUCUUGGGcuGCGa -5'
29423 5' -58.9 NC_006151.1 + 5090 0.72 0.411049
Target:  5'- -gCCGCGGCgggCGCCGGcggagacgguggcGGCCCGGCGCg -3'
miRNA:   3'- aaGGUGCUG---GCGGUC-------------UUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 96861 0.72 0.411908
Target:  5'- -aCCGCGcCCGCCGG-GCgCGGCGCg -3'
miRNA:   3'- aaGGUGCuGGCGGUCuUGgGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 139574 0.72 0.420557
Target:  5'- gUCCGCGAgCGCCuGGGCUCG-CGCc -3'
miRNA:   3'- aAGGUGCUgGCGGuCUUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 99661 0.72 0.420557
Target:  5'- cUUCCGCGcgcagaGCCGCUGGGGCCUG-CGCg -3'
miRNA:   3'- -AAGGUGC------UGGCGGUCUUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 6247 0.72 0.429314
Target:  5'- -cCCugGcugccGCCGUCGGGGCCgGACGCg -3'
miRNA:   3'- aaGGugC-----UGGCGGUCUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 2616 0.72 0.429314
Target:  5'- --gCGgGACCGggguCCGGGGCCCGGCGCg -3'
miRNA:   3'- aagGUgCUGGC----GGUCUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 81995 0.72 0.435507
Target:  5'- -aCCACGGCgGCCAGGGCggccgcgugcgccgCCGACaGCUg -3'
miRNA:   3'- aaGGUGCUGgCGGUCUUG--------------GGCUG-CGA- -5'
29423 5' -58.9 NC_006151.1 + 56158 0.72 0.438177
Target:  5'- -gUCACGGCCGCCgAGGACCgCGugcucuCGCUg -3'
miRNA:   3'- aaGGUGCUGGCGG-UCUUGG-GCu-----GCGA- -5'
29423 5' -58.9 NC_006151.1 + 81764 0.72 0.438177
Target:  5'- gUCCGCGGgCGCCaccgGGAcgcGCUCGGCGCg -3'
miRNA:   3'- aAGGUGCUgGCGG----UCU---UGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 32781 0.71 0.447145
Target:  5'- -gCCGCGGCCGCgGGGGgCCGAaGCg -3'
miRNA:   3'- aaGGUGCUGGCGgUCUUgGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 82361 0.71 0.447145
Target:  5'- gUgUACGugCGCCGGAcGCCgGGCGCg -3'
miRNA:   3'- aAgGUGCugGCGGUCU-UGGgCUGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.